RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 IL36BQ9NZH7 164 aa8.45□□□□□ -1.06
SS18-225ENST00000585121 TRAV8-6A0A0B4J262 113 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 ZFP2Q6ZN57 461 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 SPATA12Q7Z6I5 190 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 C10orf126Q8N4M7 172 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 H3BVH4 76 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 M0R036 132 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 LTAP01374 205 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 WFDC10BQ8IUB3 73 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 C11orf52Q96A22 123 aa8.44□□□□□ -1.06
SS18-225ENST00000585121 ZNF727A8MUV8 499 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 CRYGDP07320 174 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 ARMS2P0C7Q2 107 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 DNAH10OSP0CZ25 163 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 CRIP1P50238 77 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 CEBPGP53567 150 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 PNRC1Q12796 327 aaPredicted RBP8.43□□□□□ -1.06
SS18-225ENST00000585121 ZNF674Q2M3X9 581 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 DNLZQ5SXM8 178 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 PARLQ9H300 379 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 MSRB1Q9NZV6 116 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 PHLDA3Q9Y5J5 127 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 LRP1BQ9NZR2 4599 aa8.43□□□□□ -1.06
SS18-225ENST00000585121 GRIFINA4D1Z8 144 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 ERVFC1-1P60608 527 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 TMEM241Q24JQ0 296 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 LINC01559Q495D7 138 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 OR10J3Q5JRS4 329 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 CLRN3Q8NCR9 226 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 ATP6V0E2Q8NHE4 81 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 SMIM7Q9BQ49 75 aa8.42□□□□□ -1.06
SS18-225ENST00000585121 TMSB15BA0A087X1C1 80 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 IGHV3-38A0A0C4DH36 116 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 SCO2A0A1W2PP80 73 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 RHODO00212 210 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 DMRTA1Q5VZB9 504 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 BAGE2Q86Y30 109 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 GTSF1LQ9H1H1 148 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 NAT8Q9UHE5 227 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 RYR1P21817 5038 aa8.41□□□□□ -1.06
SS18-225ENST00000585121 LELP1Q5T871 98 aa8.4□□□□□ -1.06
SS18-225ENST00000585121 Q6ZRN7 208 aaPredicted RBP8.4□□□□□ -1.06
SS18-225ENST00000585121 GAGE12JA6NER3 117 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 M0R381 172 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 GAGE1Q13065 139 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 GAGE4Q13068 117 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 GAGE5Q13069 117 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 RHEBQ15382 184 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 GAGE13Q4V321 117 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 LINC01556Q5JQF7 62 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 ZFP82Q8N141 532 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 JPT2Q9H910 190 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 PGPEP1Q9NXJ5 209 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 TNFRSF18Q9Y5U5 241 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 DNAH5Q8TE73 4624 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 FAM74A4Q5TZK3 123 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 ATRAIDQ6UW56 229 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 SFRP2Q96HF1 295 aa8.39□□□□□ -1.07
SS18-225ENST00000585121 C7orf77A4D0Y5 90 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 PSCAO43653 123 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 CDK2AP2O75956 126 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 RPL35P42766 123 aaKnown RBP8.38□□□□□ -1.07
SS18-225ENST00000585121 KRTAP10-2P60368 255 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 Q6ZSN1 163 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 SAMD10Q9BYL1 202 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 SCRT2Q9NQ03 307 aa8.38□□□□□ -1.07
SS18-225ENST00000585121 A0A087WWC5 75 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 CXCL1P09341 107 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 RPL23P62829 140 aaKnown RBP8.37□□□□□ -1.07
SS18-225ENST00000585121 PRR27Q6MZM9 219 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 UFSP1Q6NVU6 142 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 DERL1Q9BUN8 251 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 MLST8Q9BVC4 326 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 TMEM242Q9NWH2 141 aa8.37□□□□□ -1.07
SS18-225ENST00000585121 A0A087WWL8 130 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 IBA57-AS1B1ANH7 110 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 IGHV3-30P01768 117 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 IGHV3-33P01772 117 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 IGHV3-30-3P0DP02 117 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 IGHV3-30-5P0DP03 117 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 CDPF1Q6NVV7 123 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 C14orf178Q8N769 122 aaPredicted RBP8.36□□□□□ -1.07
SS18-225ENST00000585121 SMIM12Q96EX1 92 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 CTDSP1Q9GZU7 261 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 RPS10P5Q9NQ39 176 aa8.36□□□□□ -1.07
SS18-225ENST00000585121 HSPG2P98160 4391 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 TRBV20OR9-2A0A075B6H5 130 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 A0A087WTM6 91 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 SCO1O75880 301 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 GNG4P50150 75 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 RPL19P84098 196 aaKnown RBP8.35□□□□□ -1.07
SS18-225ENST00000585121 LINC01551Q86U37 167 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 OCC1Q8TAD7 63 aa8.35□□□□□ -1.07
SS18-225ENST00000585121 DAZAP1Q96EP5 407 aaKnown RBP8.35□□□□□ -1.07
SS18-225ENST00000585121 MT-ND4LP03901 98 aa8.34□□□□□ -1.07
SS18-225ENST00000585121 RPL36AP83881 106 aaKnown RBP8.34□□□□□ -1.07
SS18-225ENST00000585121 ADIRFQ15847 76 aa8.34□□□□□ -1.07
SS18-225ENST00000585121 SPANXN1Q5VSR9 72 aa8.34□□□□□ -1.07
SS18-225ENST00000585121 RPL36ALQ969Q0 106 aaKnown RBP8.34□□□□□ -1.07
SS18-225ENST00000585121 ANAPC16Q96DE5 110 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms