RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 IGHV3OR16-12A0A075B7B8 117 aa7.65□□□□□ -1.18
SS18-217ENST00000580958 NPYP01303 97 aa7.65□□□□□ -1.18
SS18-217ENST00000580958 MGPP08493 103 aa7.65□□□□□ -1.18
SS18-217ENST00000580958 PMCHP20382 165 aa7.65□□□□□ -1.18
SS18-217ENST00000580958 PACRGQ96M98 296 aaPredicted RBP7.65□□□□□ -1.18
SS18-217ENST00000580958 JPT2Q9H910 190 aa7.65□□□□□ -1.18
SS18-217ENST00000580958 TRAV26-2A0A0B4J265 109 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 LOC389332A0A1B0GUA5 103 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 PPBPP02775 128 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 SAMD10Q9BYL1 202 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 GSN-AS1Q9NRJ2 163 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 GOLT1BQ9Y3E0 138 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 KIF25-AS1Q9Y6Z4 181 aa7.64□□□□□ -1.19
SS18-217ENST00000580958 HSBP1O75506 76 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 TNFRSF6BO95407 300 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 SMIM17P0DL12 118 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 AZU1P20160 251 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 AMTP48728 403 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 FAM19A2Q8N3H0 131 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 C11orf72Q8NBR9 251 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 MRAP2Q96G30 205 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 C1QTNF4Q9BXJ3 329 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 COL6A5A8TX70 2615 aa7.63□□□□□ -1.19
SS18-217ENST00000580958 A0A087WWL8 130 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 LINC00614P0C842 121 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 IFI27P40305 119 aaPredicted RBP7.62□□□□□ -1.19
SS18-217ENST00000580958 LINC00315P59091 139 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 ZNF876PQ49A33 203 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 FA2HQ7L5A8 372 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 POM121L12Q8N7R1 296 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 NRACQ8N912 160 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 CSNK1G2-AS1Q8NCQ2 148 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 PRSS3P2Q8NHM4 247 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 CHCHD1Q96BP2 118 aaKnown RBP7.62□□□□□ -1.19
SS18-217ENST00000580958 CSTL1Q9H114 145 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 MAP1LC3AQ9H492 121 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 LAMTOR2Q9Y2Q5 125 aa7.62□□□□□ -1.19
SS18-217ENST00000580958 M0R2P5 195 aa7.61□□□□□ -1.19
SS18-217ENST00000580958 SUMO4Q6EEV6 95 aa7.61□□□□□ -1.19
SS18-217ENST00000580958 LINC00518Q8N0U6 118 aa7.61□□□□□ -1.19
SS18-217ENST00000580958 SPXQ9BT56 116 aa7.61□□□□□ -1.19
SS18-217ENST00000580958 F5H697 171 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 CRYGDP07320 174 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 SMIM6P0DI80 62 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 PMCHL1Q16048 86 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 FAM74A4Q5TZK3 123 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 Q6ZWC4 215 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 IL17DQ8TAD2 202 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 RNASE8Q8TDE3 154 aaKnown RBP7.6□□□□□ -1.19
SS18-217ENST00000580958 TMEM263Q8WUH6 116 aaKnown RBP7.6□□□□□ -1.19
SS18-217ENST00000580958 RASL10AQ92737 203 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 PTH2Q96A98 100 aa7.6□□□□□ -1.19
SS18-217ENST00000580958 RPL39LQ96EH5 51 aaKnown RBP7.6□□□□□ -1.19
SS18-217ENST00000580958 MRPL16Q9NX20 251 aaKnown RBP7.6□□□□□ -1.19
SS18-217ENST00000580958 IGHV1-24A0A0C4DH33 117 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 KRTAP10-11P60412 298 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 ZNF56Q15929 161 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 PYY3Q5JQD4 70 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 ZNF705AQ6ZN79 300 aaPredicted RBP7.59□□□□□ -1.19
SS18-217ENST00000580958 Q8N8P6 123 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 C12orf57Q99622 126 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 AP5S1Q9NUS5 200 aa7.59□□□□□ -1.19
SS18-217ENST00000580958 A8MWV9 139 aa7.58□□□□□ -1.2
SS18-217ENST00000580958 RRN3P1Q2M238 152 aa7.58□□□□□ -1.2
SS18-217ENST00000580958 PIK3CD-AS1Q5SR53 167 aa7.58□□□□□ -1.2
SS18-217ENST00000580958 C16orf74Q96GX8 76 aa7.58□□□□□ -1.2
SS18-217ENST00000580958 IGLV2-18A0A075B6J9 118 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 TRGV1A0A0A0MS02 117 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 IGHV3-73A0A0B4J1V6 119 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 PRSS47A8MTI9 375 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 RS1O15537 224 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 JOSD1Q15040 202 aaPredicted RBP7.57□□□□□ -1.2
SS18-217ENST00000580958 CFAP126Q5VTH2 177 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 SMIM2Q9BVW6 85 aa7.57□□□□□ -1.2
SS18-217ENST00000580958 NXT2Q9NPJ8 142 aaKnown RBP7.57□□□□□ -1.2
SS18-217ENST00000580958 KIR2DL5BA0A0G2JN68 375 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 KIR2DL5BA0A0G2JPC4 375 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 PLAC8L1A1L4L8 177 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 LINC01546A6NGU7 62 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 PPP1R17O96001 155 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 APOC4P55056 127 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 KRTDAPP60985 99 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 SUMO2P61956 95 aaKnown RBP7.56□□□□□ -1.2
SS18-217ENST00000580958 EGFEM1PQ0D2K5 195 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 UFSP1Q6NVU6 142 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 CDPF1Q6NVV7 123 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 Q6ZTI0 123 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 LINC00173Q6ZV60 143 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 KIR2DL5AQ8N109 375 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 KIR2DL5BQ8NHK3 375 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 C20orf78Q9BR46 151 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 ST20Q9HBF5 79 aa7.56□□□□□ -1.2
SS18-217ENST00000580958 NOP10Q9NPE3 64 aaKnown RBP7.56□□□□□ -1.2
SS18-217ENST00000580958 PKD1L1Q8TDX9 2849 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 A0A096LNJ9 63 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 M0QY20 66 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 LEPROTL1O95214 131 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 SCGB1D1O95968 90 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 C3orf79P0CE67 100 aa7.55□□□□□ -1.2
SS18-217ENST00000580958 IGHV4-30-4P0DP06 118 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms