RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ASB16-AS1Q495Z4 193 aa9.51□□□□□ -0.89
VPS53-218ENST00000575207 OR10G8Q8NGN5 311 aa9.51□□□□□ -0.89
VPS53-218ENST00000575207 UQCC1Q9NVA1 299 aa9.51□□□□□ -0.89
VPS53-218ENST00000575207 ANKRD20A5PA0PJZ0 165 aa9.5□□□□□ -0.89
VPS53-218ENST00000575207 SCGB1D2O95969 90 aa9.5□□□□□ -0.89
VPS53-218ENST00000575207 S100A4P26447 101 aaKnown RBP9.5□□□□□ -0.89
VPS53-218ENST00000575207 CYCSP99999 105 aaKnown RBP9.5□□□□□ -0.89
VPS53-218ENST00000575207 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.5□□□□□ -0.89
VPS53-218ENST00000575207 MIXL1Q9H2W2 232 aa9.5□□□□□ -0.89
VPS53-218ENST00000575207 ATP6V1G2O95670 118 aa9.49□□□□□ -0.89
VPS53-218ENST00000575207 PPP1R1AQ13522 171 aa9.49□□□□□ -0.89
VPS53-218ENST00000575207 GOLT1AQ6ZVE7 132 aa9.49□□□□□ -0.89
VPS53-218ENST00000575207 CMTM2Q8TAZ6 248 aa9.49□□□□□ -0.89
VPS53-218ENST00000575207 LYRM2Q9NU23 88 aaPredicted RBP9.49□□□□□ -0.89
VPS53-218ENST00000575207 OR5AC2Q9NZP5 309 aa9.49□□□□□ -0.89
VPS53-218ENST00000575207 UBE2L5PA0A1B0GUS4 154 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 C7orf66A4D0T2 115 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 AMTP48728 403 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 NTM-AS1Q6ZSK4 140 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 MITD1Q8WV92 249 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 RETNLBQ9BQ08 111 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 NDFIP1Q9BT67 221 aa9.48□□□□□ -0.89
VPS53-218ENST00000575207 IGLV7-46A0A075B6I9 117 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 TRAV6A0A075B6T7 132 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 GVQW2A0A096LPI5 108 aaPredicted RBP9.47□□□□□ -0.89
VPS53-218ENST00000575207 A0A1W2PNN7 141 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 OR7C2O60412 319 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 GCGP01275 180 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 TMEM97Q5BJF2 176 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 C20orf203Q8NBC4 194 aa9.47□□□□□ -0.89
VPS53-218ENST00000575207 NCS1P62166 190 aa9.46□□□□□ -0.9
VPS53-218ENST00000575207 EIF5AP63241 154 aaKnown RBP9.46□□□□□ -0.9
VPS53-218ENST00000575207 UBE2L3P68036 154 aaKnown RBP9.46□□□□□ -0.9
VPS53-218ENST00000575207 SPANXN2Q5MJ10 180 aa9.46□□□□□ -0.9
VPS53-218ENST00000575207 AP3S1Q92572 193 aa9.46□□□□□ -0.9
VPS53-218ENST00000575207 IL36BQ9NZH7 164 aa9.46□□□□□ -0.9
VPS53-218ENST00000575207 TRBV25-1A0A075B6N4 114 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 GAGE12HA6NDE8 117 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 CST7O76096 145 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 PTTG1IPP53801 180 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 PRR27Q6MZM9 219 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 NEXN-AS1Q8NBZ9 246 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 SFRP2Q96HF1 295 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 RPP21Q9H633 154 aaKnown RBP9.45□□□□□ -0.9
VPS53-218ENST00000575207 OTORQ9NRC9 128 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 PHLDA3Q9Y5J5 127 aa9.45□□□□□ -0.9
VPS53-218ENST00000575207 MBPP02686 304 aaPredicted RBP9.44□□□□□ -0.9
VPS53-218ENST00000575207 FGF7P21781 194 aa9.44□□□□□ -0.9
VPS53-218ENST00000575207 KRTAP19-2Q3LHN2 52 aa9.44□□□□□ -0.9
VPS53-218ENST00000575207 VCX3AQ9NNX9 186 aa9.44□□□□□ -0.9
VPS53-218ENST00000575207 VBP1P61758 197 aa9.43□□□□□ -0.9
VPS53-218ENST00000575207 FAM74A1Q5RGS3 127 aa9.43□□□□□ -0.9
VPS53-218ENST00000575207 OR11H4Q8NGC9 324 aa9.43□□□□□ -0.9
VPS53-218ENST00000575207 SGK494Q96LW2 274 aa9.43□□□□□ -0.9
VPS53-218ENST00000575207 IGKV3D-20A0A0C4DH25 116 aa9.42□□□□□ -0.9
VPS53-218ENST00000575207 H3BVH4 76 aa9.42□□□□□ -0.9
VPS53-218ENST00000575207 CTF1Q16619 201 aa9.42□□□□□ -0.9
VPS53-218ENST00000575207 PHF5AQ7RTV0 110 aaKnown RBP9.42□□□□□ -0.9
VPS53-218ENST00000575207 CARD19Q96LW7 228 aa9.42□□□□□ -0.9
VPS53-218ENST00000575207 DERL1Q9BUN8 251 aa9.42□□□□□ -0.9
VPS53-218ENST00000575207 IGLV4-60A0A075B6I1 120 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 EIF3GO75821 320 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS53-218ENST00000575207 SULT1A2P50226 295 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 BCAP31P51572 246 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 GAGE2BQ13066 116 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 ZNF674Q2M3X9 581 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 IAH1Q2TAA2 248 aaPredicted RBP9.41□□□□□ -0.9
VPS53-218ENST00000575207 ZFP69Q49AA0 526 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 NPCDR1Q9BY65 106 aa9.41□□□□□ -0.9
VPS53-218ENST00000575207 TRBV6-1A0A0K0K1D8 114 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 L7N2F9 121 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 VAMP2P63027 116 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 IQCJQ1A5X6 159 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 SMUG1Q53HV7 270 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 C9orf116Q5BN46 136 aaPredicted RBP9.4□□□□□ -0.9
VPS53-218ENST00000575207 MCFD2Q8NI22 146 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 GSKIPQ9P0R6 139 aa9.4□□□□□ -0.9
VPS53-218ENST00000575207 A0A087WZ39 114 aa9.39□□□□□ -0.91
VPS53-218ENST00000575207 A0A1B0GUV1 79 aa9.39□□□□□ -0.91
VPS53-218ENST00000575207 GNG5P63218 68 aa9.39□□□□□ -0.91
VPS53-218ENST00000575207 IGHV1-24A0A0C4DH33 117 aa9.38□□□□□ -0.91
VPS53-218ENST00000575207 S100A11P31949 105 aa9.38□□□□□ -0.91
VPS53-218ENST00000575207 IL18Q14116 193 aa9.38□□□□□ -0.91
VPS53-218ENST00000575207 AQP10Q96PS8 301 aa9.38□□□□□ -0.91
VPS53-218ENST00000575207 M0R381 172 aa9.37□□□□□ -0.91
VPS53-218ENST00000575207 RGS5O15539 181 aa9.37□□□□□ -0.91
VPS53-218ENST00000575207 ARMS2P0C7Q2 107 aa9.37□□□□□ -0.91
VPS53-218ENST00000575207 FAUP35544 74 aaKnown RBP9.37□□□□□ -0.91
VPS53-218ENST00000575207 RAB4BP61018 213 aa9.37□□□□□ -0.91
VPS53-218ENST00000575207 LINC00526Q96FQ7 95 aa9.37□□□□□ -0.91
VPS53-218ENST00000575207 SLC25A21Q9BQT8 299 aaPredicted RBP9.37□□□□□ -0.91
VPS53-218ENST00000575207 LOC107984640A0A0U1RRK4 108 aa9.36□□□□□ -0.91
VPS53-218ENST00000575207 C9orf170A2RU37 121 aa9.36□□□□□ -0.91
VPS53-218ENST00000575207 ZNF56Q15929 161 aa9.36□□□□□ -0.91
VPS53-218ENST00000575207 PPDPFQ9H3Y8 114 aa9.36□□□□□ -0.91
VPS53-218ENST00000575207 A0A087WXM4 84 aa9.35□□□□□ -0.91
VPS53-218ENST00000575207 HBG1P69891 147 aa9.35□□□□□ -0.91
VPS53-218ENST00000575207 HBG2P69892 147 aa9.35□□□□□ -0.91
VPS53-218ENST00000575207 MBD2Q9UBB5 411 aa9.35□□□□□ -0.91
VPS53-218ENST00000575207 SERTM2A0A1B0GWG4 89 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms