RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 CLRN3Q8NCR9 226 aa12.02□□□□□ -0.49
NUP88-210ENST00000574867 JPT2Q9H910 190 aa12.02□□□□□ -0.49
NUP88-210ENST00000574867 A0A1B0GUT8 65 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 SSTP61278 116 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 NUP35Q8NFH5 326 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 TWIST1Q15672 202 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 CASC10Q5T4H9 136 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 FAM74A4Q5TZK3 123 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 UFSP1Q6NVU6 142 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 PRO0255Q9UI72 69 aa12.01□□□□□ -0.49
NUP88-210ENST00000574867 SNAPINO95295 136 aa12□□□□□ -0.49
NUP88-210ENST00000574867 CRYGDP07320 174 aa12□□□□□ -0.49
NUP88-210ENST00000574867 SMIM17P0DL12 118 aa12□□□□□ -0.49
NUP88-210ENST00000574867 A0A087WWC5 75 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 A0A087WWL8 130 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 TCTAP57738 103 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 TMEM88Q6PEY1 159 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 SAMD10Q9BYL1 202 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 MSRB1Q9NZV6 116 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 TRAV26-1A0A087WT03 109 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 C7orf77A4D0Y5 90 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 IGLL5B9A064 214 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 H3BNG1 76 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 GATA1P15976 413 aaPredicted RBP11.99□□□□□ -0.49
NUP88-210ENST00000574867 IMMP2LQ96T52 175 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 TMEM242Q9NWH2 141 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 HHLA3Q9XRX5 114 aa11.99□□□□□ -0.49
NUP88-210ENST00000574867 IGHV3-73A0A0B4J1V6 119 aa11.98□□□□□ -0.49
NUP88-210ENST00000574867 RIGQ13278 110 aa11.98□□□□□ -0.49
NUP88-210ENST00000574867 SMIM15Q7Z3B0 74 aa11.98□□□□□ -0.49
NUP88-210ENST00000574867 C14orf178Q8N769 122 aaPredicted RBP11.98□□□□□ -0.49
NUP88-210ENST00000574867 CRYBA4P53673 196 aa11.98□□□□□ -0.49
NUP88-210ENST00000574867 C15orf53Q8NAA6 179 aa11.98□□□□□ -0.49
NUP88-210ENST00000574867 A0A1B0GW15 77 aa11.97□□□□□ -0.49
NUP88-210ENST00000574867 TRBV6-4A0A1B0GX49 114 aa11.97□□□□□ -0.49
NUP88-210ENST00000574867 PAX4O43316 350 aa11.97□□□□□ -0.49
NUP88-210ENST00000574867 DPH3P1Q9H4G8 78 aa11.97□□□□□ -0.49
NUP88-210ENST00000574867 EVI2AP22794 236 aa11.96□□□□□ -0.49
NUP88-210ENST00000574867 RPS10P5Q9NQ39 176 aa11.96□□□□□ -0.49
NUP88-210ENST00000574867 KIF25-AS1Q9Y6Z4 181 aa11.96□□□□□ -0.49
NUP88-210ENST00000574867 A0A0J9YY99 117 aa11.96□□□□□ -0.5
NUP88-210ENST00000574867 RHOHQ15669 191 aa11.96□□□□□ -0.5
NUP88-210ENST00000574867 ZNF56Q15929 161 aa11.96□□□□□ -0.5
NUP88-210ENST00000574867 KCNIP4Q6PIL6 250 aa11.96□□□□□ -0.5
NUP88-210ENST00000574867 VSIG2Q96IQ7 327 aa11.96□□□□□ -0.5
NUP88-210ENST00000574867 CSMD3Q7Z407 3707 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 RAB4BP61018 213 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 ATP5L2Q7Z4Y8 100 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 SLC25A29Q8N8R3 303 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 PRADC1Q9BSG0 188 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 K7EQD1 137 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 S100A8P05109 93 aa11.95□□□□□ -0.5
NUP88-210ENST00000574867 FAM3BP58499 235 aaPredicted RBP11.95□□□□□ -0.5
NUP88-210ENST00000574867 APLNQ9ULZ1 77 aa11.94□□□□□ -0.5
NUP88-210ENST00000574867 MGPP08493 103 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 S100PP25815 95 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 LINC00315P59091 139 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 HBBP68871 147 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 BTF3L4Q96K17 158 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 TMEM191AQ9H0A3 160 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 TRAV9-1A0A075B6T8 112 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 F5H697 171 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 MRPL54Q6P161 138 aaKnown RBP11.93□□□□□ -0.5
NUP88-210ENST00000574867 ICOSQ9Y6W8 199 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 STARD9Q9P2P6 4700 aa11.93□□□□□ -0.5
NUP88-210ENST00000574867 LOC105371267A0A1B0GV96 52 aa11.92□□□□□ -0.5
NUP88-210ENST00000574867 A0A1B0GXF2 115 aa11.92□□□□□ -0.5
NUP88-210ENST00000574867 Q6ZSN1 163 aa11.92□□□□□ -0.5
NUP88-210ENST00000574867 TRBV10-1A0A0K0K1A3 114 aa11.91□□□□□ -0.5
NUP88-210ENST00000574867 NUDT3O95989 172 aa11.91□□□□□ -0.5
NUP88-210ENST00000574867 GYPEP15421 78 aa11.91□□□□□ -0.5
NUP88-210ENST00000574867 CAMPP49913 170 aa11.91□□□□□ -0.5
NUP88-210ENST00000574867 MRPL23Q16540 153 aaKnown RBP11.91□□□□□ -0.5
NUP88-210ENST00000574867 DYNC2H1Q8NCM8 4307 aaKnown RBP11.91□□□□□ -0.5
NUP88-210ENST00000574867 H7C1H1 209 aa11.9□□□□□ -0.5
NUP88-210ENST00000574867 A0A096LPF7 62 aa11.9□□□□□ -0.51
NUP88-210ENST00000574867 SRIP30626 198 aa11.9□□□□□ -0.51
NUP88-210ENST00000574867 SH2D6Q7Z4S9 175 aa11.9□□□□□ -0.51
NUP88-210ENST00000574867 FRZBQ92765 325 aa11.9□□□□□ -0.51
NUP88-210ENST00000574867 SUMO4Q6EEV6 95 aa11.89□□□□□ -0.51
NUP88-210ENST00000574867 RASL11AQ6T310 242 aa11.89□□□□□ -0.51
NUP88-210ENST00000574867 GATD1Q8NB37 220 aa11.89□□□□□ -0.51
NUP88-210ENST00000574867 URGCP-MRPS24S4R325 110 aa11.88□□□□□ -0.51
NUP88-210ENST00000574867 LOC100131303A0A0U1RQF7 123 aa11.88□□□□□ -0.51
NUP88-210ENST00000574867 M0QY20 66 aa11.87□□□□□ -0.51
NUP88-210ENST00000574867 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
NUP88-210ENST00000574867 ATRAIDQ6UW56 229 aa11.87□□□□□ -0.51
NUP88-210ENST00000574867 NEGR1Q7Z3B1 354 aa11.87□□□□□ -0.51
NUP88-210ENST00000574867 AMN1Q8IY45 258 aa11.87□□□□□ -0.51
NUP88-210ENST00000574867 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
NUP88-210ENST00000574867 TENM2Q9NT68 2774 aa11.86□□□□□ -0.51
NUP88-210ENST00000574867 LINC00694P0DN24 101 aa11.86□□□□□ -0.51
NUP88-210ENST00000574867 FAM104BQ5XKR9 115 aa11.86□□□□□ -0.51
NUP88-210ENST00000574867 MRAP2Q96G30 205 aa11.86□□□□□ -0.51
NUP88-210ENST00000574867 GAGE12JA6NER3 117 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 P0DMU3 169 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 FAM231AP0DMU4 169 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 FAM231CP0DMU5 169 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 RAB4AP20338 218 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 GAGE1Q13065 139 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms