RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGHV3-73A0A0B4J1V6 119 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 GRIFINA4D1Z8 144 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 PGPEP1LA6NFU8 196 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 KRBOX1C9JBD0 128 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 H3BVH4 76 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 EVI2AP22794 236 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 ZNF674Q2M3X9 581 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 PIK3CD-AS1Q5SR53 167 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 BAGE2Q86Y30 109 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 IL36BQ9NZH7 164 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 LY96Q9Y6Y9 160 aa5.56□□□□□ -1.52
VPS53-214ENST00000572607 TRAV1-1A0A0B4J248 108 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 TRAV8-6A0A0B4J262 113 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 LOC100131303A0A0U1RQF7 123 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 K7EP13 123 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 M0R381 172 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 RHODO00212 210 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 ARMS2P0C7Q2 107 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 SULT1A2P50226 295 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 CRIP1P50238 77 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 DNLZQ5SXM8 178 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 ZFP2Q6ZN57 461 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 NFE4Q86UQ8 179 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 ZFP82Q8N141 532 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 SLC25A29Q8N8R3 303 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 PARLQ9H300 379 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 NACAE9PAV3 2078 aa5.55□□□□□ -1.52
VPS53-214ENST00000572607 RPL35P42766 123 aaKnown RBP5.54□□□□□ -1.52
VPS53-214ENST00000572607 TIRAPP58753 221 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 LINC00315P59091 139 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 OR10J3Q5JRS4 329 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 FAM74A4Q5TZK3 123 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 PRR27Q6MZM9 219 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 WFDC10BQ8IUB3 73 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 C10orf126Q8N4M7 172 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 KRTAP1-5Q9BYS1 174 aa5.54□□□□□ -1.52
VPS53-214ENST00000572607 GAGE12JA6NER3 117 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 PDE6DO43924 150 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 TAGLN2P37802 199 aaKnown RBP5.53□□□□□ -1.52
VPS53-214ENST00000572607 MEF2BQ02080 365 aaPredicted RBP5.53□□□□□ -1.52
VPS53-214ENST00000572607 GAGE1Q13065 139 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 GAGE4Q13068 117 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 GAGE5Q13069 117 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 GAGE13Q4V321 117 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 ATP6V0E2Q8NHE4 81 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 C11orf52Q96A22 123 aa5.53□□□□□ -1.52
VPS53-214ENST00000572607 DAZAP1Q96EP5 407 aaKnown RBP5.53□□□□□ -1.52
VPS53-214ENST00000572607 IGHV3-38A0A0C4DH36 116 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 C16orf90A8MZG2 172 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 CRYGDP07320 174 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 CXCL1P09341 107 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 DNAH10OSP0CZ25 163 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 BCL2P10415 239 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 GNG4P50150 75 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 ERVFC1-1P60608 527 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 CCL20P78556 96 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 RPL19P84098 196 aaKnown RBP5.52□□□□□ -1.53
VPS53-214ENST00000572607 CENPWQ5EE01 88 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 LELP1Q5T871 98 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 KRTAP5-3Q6L8H2 238 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 C9orf62Q8N4C0 152 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 SFRP2Q96HF1 295 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 MLST8Q9BVC4 326 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 GTSF1LQ9H1H1 148 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 BIN3Q9NQY0 253 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 MED9Q9NWA0 146 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 VAX2Q9UIW0 290 aa5.52□□□□□ -1.53
VPS53-214ENST00000572607 DNAH5Q8TE73 4624 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 A0A087WWL8 130 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 XKRY2A2RUG3 117 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 RPS20P60866 119 aaKnown RBP5.51□□□□□ -1.53
VPS53-214ENST00000572607 BLOC1S1P78537 153 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 SPANXN1Q5VSR9 72 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 ZNF575Q86XF7 245 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 SMIM12Q96EX1 92 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 SAMD10Q9BYL1 202 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 JPT2Q9H910 190 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 SCRT2Q9NQ03 307 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 MSRB1Q9NZV6 116 aa5.51□□□□□ -1.53
VPS53-214ENST00000572607 A0A087WWC5 75 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 PSCAO43653 123 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 SMIM17P0DL12 118 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 RPL36AP83881 106 aaKnown RBP5.5□□□□□ -1.53
VPS53-214ENST00000572607 ZNF56Q15929 161 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 LINC01556Q5JQF7 62 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 UFSP1Q6NVU6 142 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 KCNIP4Q6PIL6 250 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 SPATA12Q7Z6I5 190 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 C14orf178Q8N769 122 aaPredicted RBP5.5□□□□□ -1.53
VPS53-214ENST00000572607 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.5□□□□□ -1.53
VPS53-214ENST00000572607 RPL36ALQ969Q0 106 aaKnown RBP5.5□□□□□ -1.53
VPS53-214ENST00000572607 DERL1Q9BUN8 251 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 TPPP3Q9BW30 176 aa5.5□□□□□ -1.53
VPS53-214ENST00000572607 TRBV10-1A0A0K0K1A3 114 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 SNAI2O43623 268 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 P01737 135 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 IGHV3-30P01768 117 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 IGHV3-33P01772 117 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 OR5AL1P0C617 328 aa5.49□□□□□ -1.53
VPS53-214ENST00000572607 IGHV3-30-3P0DP02 117 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms