RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TAX1BP3O14907 124 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 KLK9Q2XQG4 91 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 PSMG4Q5JS54 123 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 MRPL53Q96EL3 112 aaKnown RBP6.6□□□□□ -1.35
LINC00558-201ENST00000569422 KLK9Q9UKQ9 250 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 IGKV2D-26A0A0A0MRZ7 120 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 K7EMI3 77 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 CD5LO43866 347 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 SYNJ2BPP57105 145 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 CD300EQ496F6 205 aaPredicted RBP6.6□□□□□ -1.35
LINC00558-201ENST00000569422 AMMECR1LQ6DCA0 310 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 MYOZ3Q8TDC0 251 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 SPANXA1Q9NS26 97 aa6.6□□□□□ -1.35
LINC00558-201ENST00000569422 TMEM8BA6NDV4 472 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 SOCS3O14543 225 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 MALP21145 153 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 KRTAP10-9P60411 292 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 LAGE3Q14657 143 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 TMEM97Q5BJF2 176 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 Q8N8P6 123 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 NRACQ8N912 160 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 BBC3Q96PG8 261 aaPredicted RBP6.59□□□□□ -1.35
LINC00558-201ENST00000569422 MXRA5Q9NR99 2828 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 A0A087WWL8 130 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 GAGE12HA6NDE8 117 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 F5H697 171 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 CRIP2P52943 208 aaPredicted RBP6.59□□□□□ -1.35
LINC00558-201ENST00000569422 ZC2HC1BQ5TFG8 222 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 FAM74A4Q5TZK3 123 aa6.59□□□□□ -1.35
LINC00558-201ENST00000569422 MRPL35Q9NZE8 188 aaKnown RBP6.59□□□□□ -1.35
LINC00558-201ENST00000569422 TRAV8-6A0A0B4J262 113 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 IGLV1-40P01703 118 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 CD7P09564 240 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 COX6B1P14854 86 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 ZNF415Q09FC8 603 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 HSD52Q0P140 79 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 DEFB136Q30KP8 78 aa6.59□□□□□ -1.36
LINC00558-201ENST00000569422 FGF6P10767 208 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 LINC01356Q8N9X3 169 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 C1QTNF4Q9BXJ3 329 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 TEX15Q9BXT5 2789 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 IGKCP01834 107 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 DEFB125Q8N687 156 aa6.58□□□□□ -1.36
LINC00558-201ENST00000569422 IGLV2-18A0A075B6J9 118 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 GCSHP23434 173 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 OR13C6PQ8NH95 151 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 NOTCH3Q9UM47 2321 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 C4orf26Q17RF5 130 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 RASL10AQ92737 203 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 WNK1Q9H4A3 2382 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 H3BUA1 57 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 HOXA3O43365 443 aaPredicted RBP6.57□□□□□ -1.36
LINC00558-201ENST00000569422 RNASE3P12724 160 aaKnown RBP6.57□□□□□ -1.36
LINC00558-201ENST00000569422 PSMB8P28062 276 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 EMP1P54849 157 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 SUMO2P61956 95 aaKnown RBP6.57□□□□□ -1.36
LINC00558-201ENST00000569422 SPINK13Q1W4C9 94 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 C18orf65Q6ZTR6 163 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 AP1S3Q96PC3 154 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 DPH3P1Q9H4G8 78 aa6.57□□□□□ -1.36
LINC00558-201ENST00000569422 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.56□□□□□ -1.36
LINC00558-201ENST00000569422 ADAMTSL5Q6ZMM2 481 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 FAM19A5Q7Z5A7 132 aaPredicted RBP6.56□□□□□ -1.36
LINC00558-201ENST00000569422 SCGB3A1Q96QR1 104 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 SMIM2Q9BVW6 85 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 AGRNO00468 2067 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 IGHV4OR15-8A0A075B7B6 117 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 NBPF19A0A087WUL8 3843 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 A0A087WW49 117 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 DPM2O94777 84 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 APRG1Q8IVJ8 170 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 IL17DQ8TAD2 202 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 ANAPC13Q9BS18 74 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 HHLA3Q9XRX5 114 aa6.56□□□□□ -1.36
LINC00558-201ENST00000569422 H3BUT2 72 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 CFHR3Q02985 330 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 C11orf44Q8N8P7 122 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 DCANP1Q8TF63 244 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 TMEM126AQ9H061 195 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 PRO0628Q9UI54 55 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 LENEPQ9Y5L5 61 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 ZNF469Q96JG9 3925 aaPredicted RBP6.55□□□□□ -1.36
LINC00558-201ENST00000569422 ATP5LO75964 103 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 PRM2P04554 102 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 SLC25A16P16260 332 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 HIST2H2BCQ6DN03 193 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 RETNQ9HD89 108 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 MDFICQ9P1T7 246 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 PRRC2AP48634 2157 aaKnown RBP6.55□□□□□ -1.36
LINC00558-201ENST00000569422 GTF2H5Q6ZYL4 71 aa6.55□□□□□ -1.36
LINC00558-201ENST00000569422 CRYGDP07320 174 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 ZNF256Q9Y2P7 627 aaPredicted RBP6.54□□□□□ -1.36
LINC00558-201ENST00000569422 IGHV4-4A0A075B6R2 117 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 K7ERJ3 54 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 HOXD3P31249 432 aaPredicted RBP6.54□□□□□ -1.36
LINC00558-201ENST00000569422 SLURP1P55000 103 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 DSCR9P59020 149 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 SNRPD3P62318 126 aaKnown RBP6.54□□□□□ -1.36
LINC00558-201ENST00000569422 FHL3Q13643 280 aa6.54□□□□□ -1.36
LINC00558-201ENST00000569422 TAL2Q16559 108 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms