RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZFYVE26Q68DK2 2539 aa10.97□□□□□ -0.65
VPS35-210ENST00000568784 IGHV4-39P01824 125 aa10.96□□□□□ -0.65
VPS35-210ENST00000568784 RNASE13Q5GAN3 156 aaKnown RBP10.96□□□□□ -0.65
VPS35-210ENST00000568784 PIFOQ8TCI5 191 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 ID1P41134 155 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 SPINK13Q1W4C9 94 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 KHDC1LQ5JSQ8 128 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 HRNRQ86YZ3 2850 aaPredicted RBP10.95□□□□□ -0.66
VPS35-210ENST00000568784 TRAV12-1A0A0B4J245 112 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 PMVKQ15126 192 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 SUMO4Q6EEV6 95 aa10.95□□□□□ -0.66
VPS35-210ENST00000568784 IGHV4-38-2P0DP08 117 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 C11orf71Q6IPW1 123 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 TSPAN13O95857 204 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 Q6ZS46 218 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 ATP6V0BQ99437 205 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 KNCNA6PVL3 124 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 A8MWV9 139 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 C9JAW5 83 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 VCYO14598 125 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 PPP1R17O96001 155 aa10.94□□□□□ -0.66
VPS35-210ENST00000568784 MORN3Q6PF18 240 aaPredicted RBP10.94□□□□□ -0.66
VPS35-210ENST00000568784 SPXQ9BT56 116 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 FAM223BA6NKX1 122 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 FOXI1Q12951 378 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 ZNF876PQ49A33 203 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 FAM223AQ8IWN6 122 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 MRPL53Q96EL3 112 aaKnown RBP10.93□□□□□ -0.66
VPS35-210ENST00000568784 RNASE3P12724 160 aaKnown RBP10.93□□□□□ -0.66
VPS35-210ENST00000568784 LMO4P61968 165 aa10.93□□□□□ -0.66
VPS35-210ENST00000568784 CELSR1Q9NYQ6 3014 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 NDUFA4O00483 81 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 AJUBAQ96IF1 538 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 A0A0U1RRA0 63 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 J3QQQ9 107 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 DAZ1Q9NQZ3 744 aaKnown RBP10.92□□□□□ -0.66
VPS35-210ENST00000568784 ATP5J2P56134 94 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 FBXL19-AS1Q494R0 122 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 PSMG3-AS1Q96PY0 264 aa10.92□□□□□ -0.66
VPS35-210ENST00000568784 VCX2Q9H322 139 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 MDFICQ9P1T7 246 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 IGHV1-69DA0A0B4J2H0 117 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 IGHV1-69P01742 117 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 C1QTNF4Q9BXJ3 329 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 NAV2Q8IVL1 2488 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 LRRK2Q5S007 2527 aa10.91□□□□□ -0.66
VPS35-210ENST00000568784 TCL1BO95988 128 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 MT-ATP8P03928 68 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 IGHV4-61A0A0C4DH41 118 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 PAPPA-AS1Q5QFB9 102 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 GEMIN7Q9H840 131 aaKnown RBP10.9□□□□□ -0.66
VPS35-210ENST00000568784 ABCA12Q86UK0 2595 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 JMJD1CQ15652 2540 aa10.9□□□□□ -0.66
VPS35-210ENST00000568784 MUC4Q99102 2169 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 A0A0J9YXV3 536 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 A4D1N5 150 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 MAPK1IP1LQ8NDC0 245 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 LENEPQ9Y5L5 61 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 TRPT1Q86TN4 253 aaKnown RBP10.89□□□□□ -0.67
VPS35-210ENST00000568784 GPHB5Q86YW7 130 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 ERG28Q9UKR5 140 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 NDUFA11Q86Y39 141 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 PRO1854Q9UHT4 67 aa10.89□□□□□ -0.67
VPS35-210ENST00000568784 A0A0J9YY99 117 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 SNRPD3P62318 126 aaKnown RBP10.88□□□□□ -0.67
VPS35-210ENST00000568784 ITLN2Q8WWU7 325 aaPredicted RBP10.88□□□□□ -0.67
VPS35-210ENST00000568784 TSPEAR-AS2P59090 65 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 C10orf99Q6UWK7 81 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 LINC01546A6NGU7 62 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 CD28P10747 220 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 SYNJ2BPP57105 145 aa10.88□□□□□ -0.67
VPS35-210ENST00000568784 IGHV4-4A0A075B6R2 117 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 CEMP1Q6PRD7 247 aaPredicted RBP10.87□□□□□ -0.67
VPS35-210ENST00000568784 PIMREGQ9BSJ6 248 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 U3KQE9 123 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 IGHV3OR16-12A0A075B7B8 117 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 NFE4Q86UQ8 179 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 PPDPFLQ8WWR9 84 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 TRAV26-1A0A087WT03 109 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 PRM2P04554 102 aa10.87□□□□□ -0.67
VPS35-210ENST00000568784 C19orf84I3L1E1 186 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 Q8N1Y9 231 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 ANKRD29Q8N6D5 301 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 PIEZO1Q92508 2521 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 CRYGDP07320 174 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 P0DMU3 169 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 FAM231AP0DMU4 169 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 FAM231CP0DMU5 169 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 CFAP126Q5VTH2 177 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 ZNRF2Q8NHG8 242 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 USMG5Q96IX5 58 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 CFC1BP0CG36 223 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 CFC1P0CG37 223 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 GNLYP22749 145 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 ZNF580Q9UK33 172 aa10.86□□□□□ -0.67
VPS35-210ENST00000568784 DGAT2L7PQ6IED9 249 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 C10orf126Q8N4M7 172 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 CCL19Q99731 98 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 SLC25A20O43772 301 aa10.85□□□□□ -0.67
VPS35-210ENST00000568784 TSHBP01222 138 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms