RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IGHV3-13P01766 116 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 CD59P13987 128 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 CKS2P33552 79 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 CIRBPQ14011 172 aaKnown RBP2.36□□□□□ -2.03
VPS35-208ENST00000568612 TMEM30BQ3MIR4 351 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.36□□□□□ -2.03
VPS35-208ENST00000568612 C7orf65Q6ZTY9 151 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 LCA10Q71F78 164 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 PHF5AQ7RTV0 110 aaKnown RBP2.36□□□□□ -2.03
VPS35-208ENST00000568612 COX8CQ7Z4L0 72 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 DYNAPQ8N1N2 210 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 WFDC5Q8TCV5 224 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 ITLN1Q8WWA0 313 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 SPTSSAQ969W0 71 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 FXYD5Q96DB9 178 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 CCL28Q9NRJ3 127 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 ICOSQ9Y6W8 199 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 MYOFQ9NZM1 2061 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 SPTBP11277 2137 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 MUC22E2RYF6 1773 aaPredicted RBP2.36□□□□□ -2.03
VPS35-208ENST00000568612 GOLGA4Q13439 2230 aaKnown RBP2.36□□□□□ -2.03
VPS35-208ENST00000568612 HEATR5BQ9P2D3 2071 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 SHANK1Q9Y566 2161 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 TRBV6-1A0A0K0K1D8 114 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 TMEM30CPA0ZSE6 113 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 A8MUN3 132 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 F8WEM9 126 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 M0R381 172 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 COX6CP09669 75 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 ARMS2P0C7Q2 107 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 CD70P32970 193 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 Q1RN00 199 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 Q1T7F1 81 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 MIR17HGQ75NE6 70 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 Q86TA4 180 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 TSACCQ96A04 125 aaPredicted RBP2.35□□□□□ -2.03
VPS35-208ENST00000568612 TOMM6Q96B49 74 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 DCTN5Q9BTE1 182 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 SPRR3Q9UBC9 169 aa2.35□□□□□ -2.03
VPS35-208ENST00000568612 IGHV3OR16-10A0A075B7F0 116 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 A0A087WVE0 104 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 TRBV6-6A0A0A6YYG2 114 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 TRGV8A0A0C4DH27 118 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 TRBV10-3A0A0K0K1G6 114 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 LOC389332A0A1B0GUA5 103 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 A6NN06 94 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 C4orf51C9J302 202 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 F6UB75 175 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 NTN3O00634 580 aaPredicted RBP2.34□□□□□ -2.03
VPS35-208ENST00000568612 DNAL4O96015 105 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 IGHV4-34P06331 123 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 PATE4P0C8F1 98 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 BLCAPP62952 87 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 FAM229BQ4G0N7 80 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 MRPL51Q4U2R6 128 aaKnown RBP2.34□□□□□ -2.03
VPS35-208ENST00000568612 C14orf177Q52M58 125 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 S100A7L2Q5SY68 101 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 IGFL3Q6UXB1 125 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 Q75L30 129 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 FAM216BQ8N7L0 139 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 CCL17Q92583 94 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 OPRPNQ99935 248 aaPredicted RBP2.34□□□□□ -2.03
VPS35-208ENST00000568612 OVOL2Q9BRP0 275 aa2.34□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1-6A0A0C4DH72 117 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 A0A0J9YX75 114 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 LOC100131303A0A0U1RQF7 123 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 NDUFA3O95167 84 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 IGLV3-27P01718 113 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 MIFP14174 115 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 RNASE4P34096 147 aaKnown RBP2.33□□□□□ -2.04
VPS35-208ENST00000568612 FUSP35637 526 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS35-208ENST00000568612 UBE2AP49459 152 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 ZNF80P51504 273 aaPredicted RBP2.33□□□□□ -2.04
VPS35-208ENST00000568612 EIF4EBP1Q13541 118 aaPredicted RBP2.33□□□□□ -2.04
VPS35-208ENST00000568612 SOSTDC1Q6X4U4 206 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 LINC00322Q6ZN03 302 aaPredicted RBP2.33□□□□□ -2.04
VPS35-208ENST00000568612 ZNF826PQ6ZT77 177 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 FAM19A3Q7Z5A8 133 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 ZNF491Q8N8L2 437 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 DYNLRB2Q8TF09 96 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 DIRC1Q969H9 104 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 FAM167A-AS1Q96KT0 104 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 CCL13Q99616 98 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 LITAFQ99732 161 aa2.33□□□□□ -2.04
VPS35-208ENST00000568612 IGLV2-18A0A075B6J9 118 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 IGKV3D-15A0A087WSY6 115 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 IGHV1OR21-1A0A087WYE8 117 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 TRAV8-3A0A0A6YYJ7 113 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 IGHV5-51A0A0C4DH38 117 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 IGKV3D-7A0A0C4DH55 119 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 SDHAF1A6NFY7 115 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 COX7A2LO14548 114 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 SH2D1AO60880 128 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 FSTL3O95633 263 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 CD28P10747 220 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 CCL4P13236 92 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 SPINT3P49223 89 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 FXYD7P58549 80 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 PIGYQ3MUY2 71 aa2.32□□□□□ -2.04
VPS35-208ENST00000568612 Q8IYB0 196 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms