RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DAZ4Q86SG3 579 aaKnown RBP12.42□□□□□ -0.42
CLN3-218ENST00000565688 MAP1LC3BQ9GZQ8 125 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 DAZ3Q9NR90 486 aaKnown RBP12.42□□□□□ -0.42
CLN3-218ENST00000565688 Q9UF83 564 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 PHLDA3Q9Y5J5 127 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 URGCP-MRPS24S4R325 110 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 FHITP49789 147 aa12.41□□□□□ -0.42
CLN3-218ENST00000565688 FAM74A4Q5TZK3 123 aa12.41□□□□□ -0.42
CLN3-218ENST00000565688 RMI2Q96E14 147 aa12.41□□□□□ -0.42
CLN3-218ENST00000565688 FLG2Q5D862 2391 aaPredicted RBP12.4□□□□□ -0.42
CLN3-218ENST00000565688 TRBV6-1A0A0K0K1D8 114 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 GRIFINA4D1Z8 144 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 TPT1P13693 172 aaKnown RBP12.4□□□□□ -0.42
CLN3-218ENST00000565688 ZNF674Q2M3X9 581 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 STOML3Q8TAV4 291 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 SFRP2Q96HF1 295 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 FAM30AQ9NZY2 134 aa12.4□□□□□ -0.42
CLN3-218ENST00000565688 WFDC2Q14508 124 aa12.39□□□□□ -0.43
CLN3-218ENST00000565688 LINC01559Q495D7 138 aa12.39□□□□□ -0.43
CLN3-218ENST00000565688 ZFP82Q8N141 532 aa12.39□□□□□ -0.43
CLN3-218ENST00000565688 A0A087WWL8 130 aa12.38□□□□□ -0.43
CLN3-218ENST00000565688 M0R381 172 aa12.38□□□□□ -0.43
CLN3-218ENST00000565688 LTAP01374 205 aa12.38□□□□□ -0.43
CLN3-218ENST00000565688 CST9LP1Q5W188 147 aa12.38□□□□□ -0.43
CLN3-218ENST00000565688 NIT1Q86X76 327 aa12.38□□□□□ -0.43
CLN3-218ENST00000565688 TRBV10-1A0A0K0K1A3 114 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 LECT2O14960 151 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 ARPC5O15511 151 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 Q6ZSA8 131 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 CHCHD7Q9BUK0 85 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 CYTL1Q9NRR1 136 aa12.37□□□□□ -0.43
CLN3-218ENST00000565688 TMSB15BA0A087X1C1 80 aa12.36□□□□□ -0.43
CLN3-218ENST00000565688 G3V3Q6 166 aa12.36□□□□□ -0.43
CLN3-218ENST00000565688 AKR1C3P42330 323 aa12.36□□□□□ -0.43
CLN3-218ENST00000565688 RPL36AP83881 106 aaKnown RBP12.36□□□□□ -0.43
CLN3-218ENST00000565688 ELOBQ15370 118 aa12.36□□□□□ -0.43
CLN3-218ENST00000565688 KCNIP4Q6PIL6 250 aa12.36□□□□□ -0.43
CLN3-218ENST00000565688 RPL36ALQ969Q0 106 aaKnown RBP12.36□□□□□ -0.43
CLN3-218ENST00000565688 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.35□□□□□ -0.43
CLN3-218ENST00000565688 A0A087WX48 190 aa12.35□□□□□ -0.43
CLN3-218ENST00000565688 PLA2G1BP04054 148 aaKnown RBP12.35□□□□□ -0.43
CLN3-218ENST00000565688 S100A9P06702 114 aaKnown RBP12.35□□□□□ -0.43
CLN3-218ENST00000565688 Q8N976 141 aa12.35□□□□□ -0.43
CLN3-218ENST00000565688 BAALCQ8WXS3 180 aa12.35□□□□□ -0.43
CLN3-218ENST00000565688 DNAH8Q96JB1 4490 aa12.35□□□□□ -0.43
CLN3-218ENST00000565688 TRBV7-3A0A075B6L6 115 aa12.34□□□□□ -0.43
CLN3-218ENST00000565688 IGKV2D-24A0A075B6R9 120 aa12.34□□□□□ -0.43
CLN3-218ENST00000565688 KLK12Q9UKR0 248 aa12.34□□□□□ -0.43
CLN3-218ENST00000565688 UBE2D3P61077 147 aa12.33□□□□□ -0.44
CLN3-218ENST00000565688 UBE2D2P62837 147 aa12.33□□□□□ -0.44
CLN3-218ENST00000565688 RBFOX3A6NFN3 312 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 PAGE4O60829 102 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 RAB4BP61018 213 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 Q0VG73 95 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 RGS21Q2M5E4 152 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 OR10G8Q8NGN5 311 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 UBE2WQ96B02 151 aa12.32□□□□□ -0.44
CLN3-218ENST00000565688 UMAD1C9J7I0 102 aa12.31□□□□□ -0.44
CLN3-218ENST00000565688 CXCL1P09341 107 aa12.31□□□□□ -0.44
CLN3-218ENST00000565688 ATRAIDQ6UW56 229 aa12.31□□□□□ -0.44
CLN3-218ENST00000565688 ZNF345Q14585 488 aa12.3□□□□□ -0.44
CLN3-218ENST00000565688 LINC00528Q8N1L1 170 aa12.3□□□□□ -0.44
CLN3-218ENST00000565688 KCNRGQ8N5I3 272 aa12.3□□□□□ -0.44
CLN3-218ENST00000565688 SFT2D1Q8WV19 159 aa12.3□□□□□ -0.44
CLN3-218ENST00000565688 MBD3L1Q8WWY6 194 aa12.3□□□□□ -0.44
CLN3-218ENST00000565688 TRBV6-8A0A0A6YYG3 113 aa12.29□□□□□ -0.44
CLN3-218ENST00000565688 PFDN1O60925 122 aa12.29□□□□□ -0.44
CLN3-218ENST00000565688 ZNF56Q15929 161 aa12.29□□□□□ -0.44
CLN3-218ENST00000565688 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.29□□□□□ -0.44
CLN3-218ENST00000565688 FAM213BQ8TBF2 198 aa12.29□□□□□ -0.44
CLN3-218ENST00000565688 DNAJC30Q96LL9 226 aa12.29□□□□□ -0.44
CLN3-218ENST00000565688 ZNF471Q9BX82 626 aaPredicted RBP12.29□□□□□ -0.44
CLN3-218ENST00000565688 TMEM262E9PQX1 116 aa12.28□□□□□ -0.44
CLN3-218ENST00000565688 J3QL48 77 aa12.28□□□□□ -0.44
CLN3-218ENST00000565688 BAGE2Q86Y30 109 aa12.28□□□□□ -0.44
CLN3-218ENST00000565688 OR10AG1Q8NH19 301 aa12.28□□□□□ -0.44
CLN3-218ENST00000565688 MLST8Q9BVC4 326 aa12.28□□□□□ -0.44
CLN3-218ENST00000565688 PKIAP61925 76 aa12.27□□□□□ -0.45
CLN3-218ENST00000565688 LINC01620Q4KN68 170 aa12.27□□□□□ -0.45
CLN3-218ENST00000565688 C14orf177Q52M58 125 aa12.27□□□□□ -0.45
CLN3-218ENST00000565688 PRR27Q6MZM9 219 aa12.27□□□□□ -0.45
CLN3-218ENST00000565688 SSBP4Q9BWG4 385 aaPredicted RBP12.27□□□□□ -0.45
CLN3-218ENST00000565688 C1orf43Q9BWL3 253 aa12.27□□□□□ -0.45
CLN3-218ENST00000565688 SCO2A0A1W2PP80 73 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 SMLR1H3BR10 107 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 SNAI2O43623 268 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 OR5AL1P0C617 328 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 RPL19P84098 196 aaKnown RBP12.26□□□□□ -0.45
CLN3-218ENST00000565688 SCXQ7RTU7 201 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 NEXN-AS1Q8NBZ9 246 aa12.26□□□□□ -0.45
CLN3-218ENST00000565688 A0A1B0GV50 99 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 HMSDA8MTL9 139 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 CRPP02741 224 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 SPANXN1Q5VSR9 72 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 DEFB104AQ8WTQ1 72 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 CHAC1Q9BUX1 264 aa12.25□□□□□ -0.45
CLN3-218ENST00000565688 A0A0D9SG52 128 aa12.24□□□□□ -0.45
CLN3-218ENST00000565688 TMEM97Q5BJF2 176 aa12.24□□□□□ -0.45
CLN3-218ENST00000565688 KANTRA0A1W2PQU2 76 aa12.23□□□□□ -0.45
CLN3-218ENST00000565688 F5H697 171 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms