RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 NPC2P61916 151 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 S100A7L2Q5SY68 101 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 FAM74A4Q5TZK3 123 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 SPTSSBQ8NFR3 76 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 PLAC4Q8WY50 150 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 TMEM14BQ9NUH8 114 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 CNTRLQ7Z7A1 2325 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 ANKRD31Q8N7Z5 1873 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 DAPK1P53355 1430 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 BLMP54132 1417 aaPredicted RBP0.55□□□□□ -2.32
VPS13C-207ENST00000558919 FER1L6Q2WGJ9 1857 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 RBAKDNA6NC62 111 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 MCRIP1C9JLW8 97 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 K7EIL1 84 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 AKAIN1P0CW23 69 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 BTG2P78543 158 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 SSBP1Q04837 148 aaKnown RBP0.55□□□□□ -2.32
VPS13C-207ENST00000558919 Q56UQ5 140 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 SPINK9Q5DT21 86 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 C12orf73Q69YU5 71 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 C20orf197Q8N268 126 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 C10orf82Q8WW14 230 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 TMEM203Q969S6 136 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 DSCR8Q96T75 97 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 C2orf88Q9BSF0 95 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 SERP1Q9Y6X1 66 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 KDM6BO15054 1643 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 LRP5O75197 1615 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 FSIP2Q5CZC0 6907 aa0.55□□□□□ -2.32
VPS13C-207ENST00000558919 PTPRMP28827 1452 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 ASCC3Q8N3C0 2202 aaKnown RBP0.54□□□□□ -2.32
VPS13C-207ENST00000558919 CITO14578 2027 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 FANCMQ8IYD8 2048 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 PHRF1Q9P1Y6 1649 aaKnown RBP0.54□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF462Q96JM2 2506 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 TRBV10-3A0A0K0K1G6 114 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 LOC100130705A0A1B0GUX0 176 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 SNAPC5O75971 98 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 LY6G6CO95867 125 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 CCL3L1P16619 93 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 ELOF1P60002 83 aaKnown RBP0.54□□□□□ -2.32
VPS13C-207ENST00000558919 Q6AWC8 147 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 C4orf33Q8N1A6 199 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 COX7B2Q8TF08 81 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 PP6455Q8WZ26 134 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 SCN3BQ9NY72 215 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 GNG8Q9UK08 70 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 V9GYV3 84 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 MED12Q93074 2177 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 PTPRDP23468 1912 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 CFTRP13569 1480 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF518AQ6AHZ1 1483 aa0.54□□□□□ -2.32
VPS13C-207ENST00000558919 ADGRB1O14514 1584 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 KIDINS220Q9ULH0 1771 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 MIF4GDA9UHW6 222 aaKnown RBP0.53□□□□□ -2.32
VPS13C-207ENST00000558919 LINC00587B1AMM8 73 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 F6UZH7 168 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 APOC4-APOC2K7ER74 178 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 IFNGP01579 166 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 APOC2P02655 101 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 UBE2D1P51668 147 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF137PP52743 207 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 RPL37P61927 97 aaKnown RBP0.53□□□□□ -2.32
VPS13C-207ENST00000558919 MRPS10P82664 201 aaKnown RBP0.53□□□□□ -2.32
VPS13C-207ENST00000558919 RBM3P98179 157 aaKnown RBP0.53□□□□□ -2.32
VPS13C-207ENST00000558919 C6orf52Q5T4I8 152 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF818PQ6ZRF7 136 aa0.53□□□□□ -2.32
VPS13C-207ENST00000558919 LSM10Q969L4 123 aaKnown RBP0.53□□□□□ -2.32
VPS13C-207ENST00000558919 IFT140Q96RY7 1462 aa0.53□□□□□ -2.33
VPS13C-207ENST00000558919 ZGRF1Q86YA3 2104 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 TRBV7-1A0A0A6YYK4 115 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 F2Z2F3 143 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 GNG4P50150 75 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 TPPP2P59282 170 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 CCL8P80075 99 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 CATR1Q13166 79 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 WHAMMP3Q1A5X7 153 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 C8orf59Q8N0T1 100 aaPredicted RBP0.52□□□□□ -2.33
VPS13C-207ENST00000558919 Q8N8P6 123 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 PPP3R2Q96LZ3 170 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 LINC00312Q9Y6C7 94 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 SMG6Q86US8 1419 aaKnown RBP0.52□□□□□ -2.33
VPS13C-207ENST00000558919 MBD5Q9P267 1494 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 CTTNBP2Q8WZ74 1663 aa0.52□□□□□ -2.33
VPS13C-207ENST00000558919 XIRP1Q702N8 1843 aaKnown RBP0.52□□□□□ -2.33
VPS13C-207ENST00000558919 A0A096LNT2 108 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 TRAV13-2A0A0B4J235 113 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 SPAARA0A1B0GVQ0 90 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 HCG22E2RYF7 251 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 CORTO00230 105 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 MED14O60244 1454 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 SIX6O95475 246 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 TNFP01375 233 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 SMIM6P0DI80 62 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 S100A1P23297 94 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 EDDM3BP56851 147 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 INSL4Q14641 139 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 MRPL54Q6P161 138 aaKnown RBP0.51□□□□□ -2.33
VPS13C-207ENST00000558919 KTN1Q86UP2 1357 aaKnown RBP0.51□□□□□ -2.33
VPS13C-207ENST00000558919 TET1Q8NFU7 2136 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms