RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 FAM159AQ6UWV7 190 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 KLLNB2CW77 178 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 SUMO4Q6EEV6 95 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 APRG1Q8IVJ8 170 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 OR11H12B2RN74 326 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 C12orf74Q32Q52 190 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 OR11H1Q8NG94 326 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 OR11H2Q8NH07 326 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 PLEKHB2Q96CS7 222 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 PRADC1Q9BSG0 188 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 TRAV12-1A0A0B4J245 112 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 SFTA2Q6UW10 78 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 TP53TG1Q9Y2A0 90 aa9.61□□□□□ -0.87
LDLR-207ENST00000558013 IGLL5B9A064 214 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 PRM2P04554 102 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 RPL24P83731 157 aaKnown RBP9.6□□□□□ -0.87
LDLR-207ENST00000558013 OPRPNQ99935 248 aaPredicted RBP9.6□□□□□ -0.87
LDLR-207ENST00000558013 MYMXA0A1B0GTQ4 84 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 LGALS1P09382 135 aaKnown RBP9.6□□□□□ -0.87
LDLR-207ENST00000558013 PSMB8P28062 276 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 USP24Q9UPU5 2620 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 AKAP9Q99996 3911 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 H3BMG7 143 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 H3BUA1 57 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 SLC25A16P16260 332 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 SPINK13Q1W4C9 94 aa9.6□□□□□ -0.87
LDLR-207ENST00000558013 ZNF256Q9Y2P7 627 aaPredicted RBP9.6□□□□□ -0.87
LDLR-207ENST00000558013 TRBV7-3A0A075B6L6 115 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 C11orf86A6NJI1 115 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 SYNJ2BPP57105 145 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 WFDC2Q14508 124 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 WNK1Q9H4A3 2382 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 CCDC168Q8NDH2 2452 aa9.59□□□□□ -0.87
LDLR-207ENST00000558013 TEX48A0A1B0GUV7 120 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 G3V4G9 280 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 ZFP2Q6ZN57 461 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 Q8N1Y9 231 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 ZNF479Q96JC4 524 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 B4DSR2 109 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 E9PLD3 99 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 HTN1P15515 57 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 OR5A1Q8NGJ0 315 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 IGLV4-69A0A075B6H9 119 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 SDHAF1A6NFY7 115 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 ZNF815PA8K554 130 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 NDUFS8O00217 210 aa9.58□□□□□ -0.88
LDLR-207ENST00000558013 POLR2KP53803 58 aaKnown RBP9.58□□□□□ -0.88
LDLR-207ENST00000558013 NXPH4O95158 308 aa9.57□□□□□ -0.88
LDLR-207ENST00000558013 BRI3O95415 125 aa9.57□□□□□ -0.88
LDLR-207ENST00000558013 NBPF19A0A087WUL8 3843 aa9.57□□□□□ -0.88
LDLR-207ENST00000558013 IGIPA6NJ69 53 aa9.57□□□□□ -0.88
LDLR-207ENST00000558013 MORN3Q6PF18 240 aaPredicted RBP9.57□□□□□ -0.88
LDLR-207ENST00000558013 MED14OSP0DP75 135 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 ID1P41134 155 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 SH2D6Q7Z4S9 175 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 TGFAP01135 160 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 SCGB2A2Q13296 93 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 SCGB1D4Q6XE38 83 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 C18orf65Q6ZTR6 163 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 IGHV3-16A0A0C4DH30 117 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 TSPEAR-AS2P59090 65 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 DEFB136Q30KP8 78 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 FOXI2Q6ZQN5 318 aa9.56□□□□□ -0.88
LDLR-207ENST00000558013 C2CD3Q4AC94 2353 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 IGHV4OR15-8A0A075B7B6 117 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 A0A087WW49 117 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 IGHV3-73A0A0B4J1V6 119 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 A0A0J9YX75 114 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 K7EMT4 169 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 PRB1P04280 392 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 COX6B1P14854 86 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 ZNF56Q15929 161 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 POM121L12Q8N7R1 296 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 ZNRF2Q8NHG8 242 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 JMJD1CQ15652 2540 aa9.55□□□□□ -0.88
LDLR-207ENST00000558013 APCP25054 2843 aa9.54□□□□□ -0.88
LDLR-207ENST00000558013 Q9UF83 564 aa9.54□□□□□ -0.88
LDLR-207ENST00000558013 DUX3Q96PT4 197 aa9.54□□□□□ -0.88
LDLR-207ENST00000558013 TRBV7-9A0A0J9YWB2 115 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 ETDBQ3ZM63 59 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 TMEM170BQ5T4T1 132 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 KIR2DL4Q99706 377 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 BEX4Q9NWD9 120 aaPredicted RBP9.53□□□□□ -0.88
LDLR-207ENST00000558013 IGHV3-64A0A075B6Q5 118 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 RBMY1A1P0DJD3 496 aaKnown RBP9.53□□□□□ -0.88
LDLR-207ENST00000558013 RBMY1CP0DJD4 496 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 P0DMU3 169 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 FAM231AP0DMU4 169 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 FAM231CP0DMU5 169 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 PROK1P58294 105 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 SRSF9Q13242 221 aaKnown RBP eCLIP9.53□□□□□ -0.88
LDLR-207ENST00000558013 RBMY1FQ15415 496 aaKnown RBP9.53□□□□□ -0.88
LDLR-207ENST00000558013 TAL2Q16559 108 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 RRN3P1Q2M238 152 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 K7EQG2 157 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 M0QY20 66 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 VCYO14598 125 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 PGPEP1Q9NXJ5 209 aa9.53□□□□□ -0.88
LDLR-207ENST00000558013 PRRC2AP48634 2157 aaKnown RBP9.52□□□□□ -0.88
LDLR-207ENST00000558013 UBR5O95071 2799 aaPredicted RBP9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms