RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NPSP0C0P6 89 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 Q8N1Y9 231 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 DEFB125Q8N687 156 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 C9orf85Q96MD7 179 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 MAST4O15021 2626 aa12.43□□□□□ -0.42
LDLR-206ENST00000557958 PRSS47A8MTI9 375 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 C14orf178Q8N769 122 aaPredicted RBP12.42□□□□□ -0.42
LDLR-206ENST00000557958 CITED1Q99966 193 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 LINC01546A6NGU7 62 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 SYS1-DBNDD2H3BUS1 97 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 PET117Q6UWS5 81 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 STHQ8IWL8 128 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 Q8N8P6 123 aa12.42□□□□□ -0.42
LDLR-206ENST00000557958 CBY3A6NI87 242 aa12.41□□□□□ -0.42
LDLR-206ENST00000557958 MGPP08493 103 aa12.41□□□□□ -0.42
LDLR-206ENST00000557958 STPG4Q8N801 248 aa12.41□□□□□ -0.42
LDLR-206ENST00000557958 NRACQ8N912 160 aa12.41□□□□□ -0.42
LDLR-206ENST00000557958 TRAV26-2A0A0B4J265 109 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 FXYD7P58549 80 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 ODF3L2Q3SX64 289 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 ATOH7Q8N100 152 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 C3orf56Q8N813 242 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 ST20Q9HBF5 79 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 INSP01308 110 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 ORAOV1Q8WV07 137 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 C20orf78Q9BR46 151 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 ZNF747Q9BV97 191 aa12.4□□□□□ -0.42
LDLR-206ENST00000557958 IGLV1-51P01701 117 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 IGLL1P15814 213 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 GATA1P15976 413 aaPredicted RBP12.39□□□□□ -0.43
LDLR-206ENST00000557958 MAJINQ3KP22 176 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 POM121L12Q8N7R1 296 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 FAM110AQ9BQ89 295 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 MDFICQ9P1T7 246 aa12.39□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1BA6NDE4 496 aaKnown RBP12.38□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1EA6NEQ0 496 aaKnown RBP12.38□□□□□ -0.43
LDLR-206ENST00000557958 SPRY2O43597 315 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 GAS8-AS1O95177 125 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1DP0C7P1 496 aaKnown RBP12.38□□□□□ -0.43
LDLR-206ENST00000557958 C12orf54Q6X4T0 127 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 SPATA12Q7Z6I5 190 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 WNK1Q9H4A3 2382 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 K7EMI3 77 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 LINC00173Q6ZV60 143 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 LINC00467Q9BRT7 94 aa12.38□□□□□ -0.43
LDLR-206ENST00000557958 A0A096LNJ9 63 aa12.37□□□□□ -0.43
LDLR-206ENST00000557958 FCER1GP30273 86 aa12.37□□□□□ -0.43
LDLR-206ENST00000557958 SUMO2P61956 95 aaKnown RBP12.37□□□□□ -0.43
LDLR-206ENST00000557958 TMEM158Q8WZ71 300 aa12.37□□□□□ -0.43
LDLR-206ENST00000557958 SMIM2Q9BVW6 85 aa12.37□□□□□ -0.43
LDLR-206ENST00000557958 ZNF415Q09FC8 603 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 IGLV2-18A0A075B6J9 118 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 LAGE3Q14657 143 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 LINC00482Q8N8I6 264 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 RASL10AQ92737 203 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 KIF25-AS1Q9Y6Z4 181 aa12.36□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1A1P0DJD3 496 aaKnown RBP12.35□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1CP0DJD4 496 aa12.35□□□□□ -0.43
LDLR-206ENST00000557958 RBMY1FQ15415 496 aaKnown RBP12.35□□□□□ -0.43
LDLR-206ENST00000557958 ZNF876PQ49A33 203 aa12.35□□□□□ -0.43
LDLR-206ENST00000557958 TRPT1Q86TN4 253 aaKnown RBP12.35□□□□□ -0.43
LDLR-206ENST00000557958 LINC01587Q99440 93 aa12.35□□□□□ -0.43
LDLR-206ENST00000557958 AGRNO00468 2067 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 F5H697 171 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 HTN1P15515 57 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 ORMDL2Q53FV1 153 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 PIK3CD-AS1Q5SR53 167 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 IFI27L1Q96BM0 104 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 FBN1P35555 2871 aaKnown RBP12.34□□□□□ -0.43
LDLR-206ENST00000557958 HSBP1L1C9JCN9 74 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 H0Y8G0 127 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 HINT1P49773 126 aaPredicted RBP12.34□□□□□ -0.43
LDLR-206ENST00000557958 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 SPATA3Q8NHX4 192 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 COX11Q9Y6N1 276 aa12.34□□□□□ -0.43
LDLR-206ENST00000557958 A0A087WWL8 130 aa12.33□□□□□ -0.44
LDLR-206ENST00000557958 LINC00315P59091 139 aa12.33□□□□□ -0.44
LDLR-206ENST00000557958 RPL32P62910 135 aaKnown RBP12.32□□□□□ -0.44
LDLR-206ENST00000557958 BEAN1Q3B7T3 259 aa12.32□□□□□ -0.44
LDLR-206ENST00000557958 FAM74A4Q5TZK3 123 aa12.32□□□□□ -0.44
LDLR-206ENST00000557958 PTH2Q96A98 100 aa12.32□□□□□ -0.44
LDLR-206ENST00000557958 SORL1Q92673 2214 aa12.32□□□□□ -0.44
LDLR-206ENST00000557958 M0R2P5 195 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 ATP5LO75964 103 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 ZNF56Q15929 161 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 SUMO4Q6EEV6 95 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 RPL39LQ96EH5 51 aaKnown RBP12.31□□□□□ -0.44
LDLR-206ENST00000557958 SPXQ9BT56 116 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 JPT2Q9H910 190 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 INSL3P51460 131 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 XCL2Q9UBD3 114 aa12.31□□□□□ -0.44
LDLR-206ENST00000557958 MUC4Q99102 2169 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 A8MWV9 139 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 NUDT3O95989 172 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 LGALS9BQ3B8N2 356 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 LGALS9CQ6DKI2 356 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 SLC25A34Q6PIV7 304 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 ATRQ13535 2644 aa12.3□□□□□ -0.44
LDLR-206ENST00000557958 SHISA2Q6UWI4 295 aa12.29□□□□□ -0.44
LDLR-206ENST00000557958 TENM1Q9UKZ4 2725 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms