RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CRYGDP07320 174 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 ASIPP42127 132 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 HIST2H2BDQ6DRA6 164 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 IGHV3-73A0A0B4J1V6 119 aa9.3□□□□□ -0.92
LDLR-205ENST00000557933 LINC01546A6NGU7 62 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 PF4V1P10720 104 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 GATA3P23771 443 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 CRIP2P52943 208 aaPredicted RBP9.29□□□□□ -0.92
LDLR-205ENST00000557933 OR10J6PQ8NGY7 276 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 PIFOQ8TCI5 191 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 TOMM6Q96B49 74 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 ATP6V0BQ99437 205 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 TCL1BO95988 128 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 RNASE3P12724 160 aaKnown RBP9.29□□□□□ -0.92
LDLR-205ENST00000557933 XGP55808 180 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 BLCAPP62952 87 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 FOXI1Q12951 378 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 C1orf122Q6ZSJ8 110 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 TRPT1Q86TN4 253 aaKnown RBP9.29□□□□□ -0.92
LDLR-205ENST00000557933 ITLN2Q8WWU7 325 aaPredicted RBP9.29□□□□□ -0.92
LDLR-205ENST00000557933 SIRPDQ9H106 197 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 DPH3P1Q9H4G8 78 aa9.29□□□□□ -0.92
LDLR-205ENST00000557933 SPINK8P0C7L1 97 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 C9orf47Q6ZRZ4 202 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 CENPVL3A0A0U1RRI6 287 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 KLK9Q9UKQ9 250 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 PKD1L2Q7Z442 2459 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 TRAV41A0A0B4J266 112 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 CD7P09564 240 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 ORMDL2Q53FV1 153 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 C10orf99Q6UWK7 81 aa9.28□□□□□ -0.92
LDLR-205ENST00000557933 CFAP126Q5VTH2 177 aa9.27□□□□□ -0.93
LDLR-205ENST00000557933 ZNRF2Q8NHG8 242 aa9.27□□□□□ -0.93
LDLR-205ENST00000557933 DUX5Q96PT3 197 aa9.27□□□□□ -0.93
LDLR-205ENST00000557933 CDIP1Q9H305 208 aa9.27□□□□□ -0.93
LDLR-205ENST00000557933 TRAV2A0A0B4J234 112 aa9.27□□□□□ -0.93
LDLR-205ENST00000557933 DLX4Q92988 240 aaPredicted RBP9.27□□□□□ -0.93
LDLR-205ENST00000557933 TRAV21A0A0B4J279 112 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 RBAKDNA6NC62 111 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 CEMP1Q6PRD7 247 aaPredicted RBP9.26□□□□□ -0.93
LDLR-205ENST00000557933 CARD19Q96LW7 228 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 IGLV4-69A0A075B6H9 119 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 ZNF688P0C7X2 276 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 GNLYP22749 145 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 C5orf56Q8N8D9 126 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 SPATA25Q9BR10 227 aa9.26□□□□□ -0.93
LDLR-205ENST00000557933 NPFFO15130 113 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 ELANEP08246 267 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 SUMO4Q6EEV6 95 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 C11orf71Q6IPW1 123 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 Q6ZSV7 163 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 MRAP2Q96G30 205 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 MDFICQ9P1T7 246 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 A0A1B0GV72 72 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 SDHAF1A6NFY7 115 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 A8MZ25 164 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 EBI3Q14213 229 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 ZNF56Q15929 161 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 RHPN1-AS1Q9BWJ2 59 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 C1QTNF4Q9BXJ3 329 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 GEMIN7Q9H840 131 aaKnown RBP9.25□□□□□ -0.93
LDLR-205ENST00000557933 TEX15Q9BXT5 2789 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 A0A0J9YY99 117 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 IGHV4-39P01824 125 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 CFC1BP0CG36 223 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 CFC1P0CG37 223 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 P0DMU3 169 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 FAM231AP0DMU4 169 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 FAM231CP0DMU5 169 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 IGHV4-38-2P0DP08 117 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 SRSF2Q01130 221 aaKnown RBP9.25□□□□□ -0.93
LDLR-205ENST00000557933 NDUFA11Q86Y39 141 aa9.25□□□□□ -0.93
LDLR-205ENST00000557933 COX6B1P14854 86 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 Q1RN00 199 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 MINOS1Q5TGZ0 78 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 MINOS1-NBL1R4GNA1 71 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 UBE2E1P51965 193 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 CRYBA4P53673 196 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 ZNF843Q8N446 348 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 Q9UF83 564 aa9.24□□□□□ -0.93
LDLR-205ENST00000557933 TRAV12-1A0A0B4J245 112 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 C9JAW5 83 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 TAL2Q16559 108 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 ANKRD29Q8N6D5 301 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 TRBV7-1A0A0A6YYK4 115 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 A4D1N5 150 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 KNCNA6PVL3 124 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 FAM159AQ6UWV7 190 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 C9orf139Q6ZV77 190 aa9.23□□□□□ -0.93
LDLR-205ENST00000557933 PRRC2AP48634 2157 aaKnown RBP9.22□□□□□ -0.93
LDLR-205ENST00000557933 H3BUX3 64 aa9.22□□□□□ -0.93
LDLR-205ENST00000557933 EIF4EBP3O60516 100 aaPredicted RBP9.22□□□□□ -0.93
LDLR-205ENST00000557933 FN1P02751 2386 aaKnown RBP9.22□□□□□ -0.93
LDLR-205ENST00000557933 PRSS2P07478 247 aa9.22□□□□□ -0.93
LDLR-205ENST00000557933 PROK1P58294 105 aa9.22□□□□□ -0.93
LDLR-205ENST00000557933 SPINK13Q1W4C9 94 aa9.22□□□□□ -0.93
LDLR-205ENST00000557933 ANKRD17O75179 2603 aaKnown RBP9.22□□□□□ -0.93
LDLR-205ENST00000557933 UBE2D1P51668 147 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 Q6ZUT4 128 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 IGHV4-4A0A075B6R2 117 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms