RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 FAM159AQ6UWV7 190 aa8.53□□□□□ -1.04
SRP54-213ENST00000556994 NDUFA11Q86Y39 141 aa8.53□□□□□ -1.04
SRP54-213ENST00000556994 ZNRF2Q8NHG8 242 aa8.53□□□□□ -1.04
SRP54-213ENST00000556994 C1QTNF4Q9BXJ3 329 aa8.53□□□□□ -1.04
SRP54-213ENST00000556994 ZNF256Q9Y2P7 627 aaPredicted RBP8.53□□□□□ -1.04
SRP54-213ENST00000556994 SDHAF1A6NFY7 115 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 PPP1R17O96001 155 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 IGKV3-20P01619 116 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 MED14OSP0DP75 135 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 SORL1Q92673 2214 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 SPTBN4Q9H254 2564 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.52□□□□□ -1.057e-8■■■■■ 26.8
SRP54-213ENST00000556994 TCL1BO95988 128 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 CFC1BP0CG36 223 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 CFC1P0CG37 223 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 IGHV4-38-2P0DP08 117 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 HERVK_113P61574 105 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 APRG1Q8IVJ8 170 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 ATP6V0BQ99437 205 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 KIR2DL4Q99706 377 aa8.52□□□□□ -1.05
SRP54-213ENST00000556994 IGHV4OR15-8A0A075B7B6 117 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 A0A087WW49 117 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 IGHV1-69DA0A0B4J2H0 117 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 IGHV1-69P01742 117 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 UBE2D3P61077 147 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 UBE2D2P62837 147 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 FHL3Q13643 280 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 POM121L12Q8N7R1 296 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 IGHV3-64A0A075B6Q5 118 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 TRAV12-2A0A075B6T6 113 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 H3BUX3 64 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 VCYO14598 125 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 CDIP1Q9H305 208 aa8.51□□□□□ -1.05
SRP54-213ENST00000556994 KLLNB2CW77 178 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 IGHV3-30P01768 117 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 IGHV3-30-5P0DP03 117 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 CRIP2P52943 208 aaPredicted RBP8.5□□□□□ -1.05
SRP54-213ENST00000556994 CARD19Q96LW7 228 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 SPG11Q96JI7 2443 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 NCOR2Q9Y618 2525 aa8.5□□□□□ -1.05
SRP54-213ENST00000556994 C19orf84I3L1E1 186 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 NXPH4O95158 308 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 MDFICQ9P1T7 246 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 CHD8Q9HCK8 2581 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 A0A1B0GV72 72 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 IGHV4-39P01824 125 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 SCGB1C2P0DMR2 95 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 CKS1BP61024 79 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 SLC25A29Q8N8R3 303 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 RAX2Q96IS3 184 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 USMG5Q96IX5 58 aa8.49□□□□□ -1.05
SRP54-213ENST00000556994 DAZ1Q9NQZ3 744 aaKnown RBP8.49□□□□□ -1.05
SRP54-213ENST00000556994 J3QQQ9 107 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 IGHG2P01859 326 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 MT-ATP8P03928 68 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 ZNF56Q15929 161 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 TMEM95Q3KNT9 176 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 ZNF876PQ49A33 203 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 PAPPA-AS1Q5QFB9 102 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 TMEM141Q96I45 108 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 AMELXQ99217 191 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 CSMD2Q7Z408 3487 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 IGHV4-61A0A0C4DH41 118 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 H7C2G1 150 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 ZNF688P0C7X2 276 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 TIMM17AQ99595 171 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 CSPG4Q6UVK1 2322 aa8.48□□□□□ -1.05
SRP54-213ENST00000556994 LGALS3P17931 250 aaKnown RBP8.47□□□□□ -1.05
SRP54-213ENST00000556994 LY6DQ14210 128 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 ATP6V0E2Q8NHE4 81 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 DCANP1Q8TF63 244 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 TRBV27A0A0K0K1C4 114 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 SPINK8P0C7L1 97 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 RPL32P62910 135 aaKnown RBP8.47□□□□□ -1.05
SRP54-213ENST00000556994 C10orf126Q8N4M7 172 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 PRO1854Q9UHT4 67 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 ZNF580Q9UK33 172 aa8.47□□□□□ -1.05
SRP54-213ENST00000556994 TRBV7-9A0A0J9YWB2 115 aa8.46□□□□□ -1.05
SRP54-213ENST00000556994 A4D1N5 150 aa8.46□□□□□ -1.05
SRP54-213ENST00000556994 XGP55808 180 aa8.46□□□□□ -1.05
SRP54-213ENST00000556994 DOPEY2Q9Y3R5 2298 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 TRAV2A0A0B4J234 112 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 LGALS9O00182 355 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 EIF4EBP3O60516 100 aaPredicted RBP8.46□□□□□ -1.06
SRP54-213ENST00000556994 ID1P41134 155 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 C10orf99Q6UWK7 81 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 TRPT1Q86TN4 253 aaKnown RBP8.46□□□□□ -1.06
SRP54-213ENST00000556994 TEN1Q86WV5 123 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 Q8N1Y9 231 aa8.46□□□□□ -1.06
SRP54-213ENST00000556994 IGHV3-16A0A0C4DH30 117 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 A6NDX4 124 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 M0QY20 66 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 P0DMU3 169 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 FAM231AP0DMU4 169 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 FAM231CP0DMU5 169 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 A8MWV9 139 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 SPINK13Q1W4C9 94 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 LYRM7Q5U5X0 104 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 Q6ZUT4 128 aa8.45□□□□□ -1.06
SRP54-213ENST00000556994 ANKRD29Q8N6D5 301 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms