RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SNAPC5O75971 98 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 C9orf116Q5BN46 136 aaPredicted RBP2.08□□□□□ -2.08
SCFD1-208ENST00000553278 Q6AWC8 147 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 LINC00575Q6W349 94 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 TSKUQ8WUA8 353 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 RPRMQ9NS64 109 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 ZNF518AQ6AHZ1 1483 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 PIGBOS1A0A0B4J2F0 54 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 TCRBV3S1A0A5B6 114 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 CBLN1P23435 193 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 EFNA4P52798 201 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 UBE2G1P62253 170 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 FXYD3Q14802 87 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 C12orf73Q69YU5 71 aa2.07□□□□□ -2.08
SCFD1-208ENST00000553278 NBDYA0A0U1RRE5 68 aa2.06□□□□□ -2.08
SCFD1-208ENST00000553278 IFNA17P01571 189 aa2.06□□□□□ -2.08
SCFD1-208ENST00000553278 GNG4P50150 75 aa2.06□□□□□ -2.08
SCFD1-208ENST00000553278 CYP2G1PQ6ZSU1 146 aa2.06□□□□□ -2.08
SCFD1-208ENST00000553278 SPTBP11277 2137 aa2.06□□□□□ -2.08
SCFD1-208ENST00000553278 DLEC1Q9Y238 1755 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 TRAV12-3A0A0B4J271 114 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 APOC4-APOC2K7ER74 178 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 APOC2P02655 101 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 CAV3P56539 151 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 TPPP2P59282 170 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 Q86TA4 180 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 LSM10Q969L4 123 aaKnown RBP2.05□□□□□ -2.08
SCFD1-208ENST00000553278 CCL19Q99731 98 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 KTN1Q86UP2 1357 aaKnown RBP2.05□□□□□ -2.08
SCFD1-208ENST00000553278 DLG5Q8TDM6 1919 aa2.05□□□□□ -2.08
SCFD1-208ENST00000553278 KIAA0100Q14667 2235 aaKnown RBP2.05□□□□□ -2.08
SCFD1-208ENST00000553278 A2ML1A8K2U0 1454 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 ARL14EPLP0DKL9 152 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 S100A7L2Q5SY68 101 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 Q6ZS92 163 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 C5orf56Q8N8D9 126 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 PPP1R1CQ8WVI7 109 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 MED12Q93074 2177 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 TCEAL7Q9BRU2 100 aa2.04□□□□□ -2.08
SCFD1-208ENST00000553278 LAMB1P07942 1786 aa2.03□□□□□ -2.08
SCFD1-208ENST00000553278 ZNF142P52746 1687 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-208ENST00000553278 TRBV30A0A0K0K1B3 111 aa2.03□□□□□ -2.08
SCFD1-208ENST00000553278 TNFP01375 233 aa2.03□□□□□ -2.08
SCFD1-208ENST00000553278 SPANXDQ9BXN6 97 aa2.03□□□□□ -2.08
SCFD1-208ENST00000553278 RREB1Q92766 1687 aa2.02□□□□□ -2.09
SCFD1-208ENST00000553278 MYOM2P54296 1465 aa2.02□□□□□ -2.09
SCFD1-208ENST00000553278 BLMP54132 1417 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-208ENST00000553278 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.02□□□□□ -2.09
SCFD1-208ENST00000553278 PPP3R1P63098 170 aa2.02□□□□□ -2.09
SCFD1-208ENST00000553278 MRPL54Q6P161 138 aaKnown RBP2.02□□□□□ -2.09
SCFD1-208ENST00000553278 LINC00208Q96KT6 92 aa2.02□□□□□ -2.09
SCFD1-208ENST00000553278 BCORL1Q5H9F3 1711 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 FXYD1O00168 92 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 NPC2P61916 151 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 CATR1Q13166 79 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 SPTSSBQ8NFR3 76 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 COA4Q9NYJ1 87 aa2.01□□□□□ -2.09
SCFD1-208ENST00000553278 AFDNP55196 1824 aaKnown RBP2.01□□□□□ -2.09
SCFD1-208ENST00000553278 MUC22E2RYF6 1773 aaPredicted RBP2□□□□□ -2.09
SCFD1-208ENST00000553278 CITO14578 2027 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 COL6A6A6NMZ7 2263 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 TRBV10-3A0A0K0K1G6 114 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 C20orf202A1L168 122 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 ZNF56Q15929 161 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 C10orf82Q8WW14 230 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 PPP3R2Q96LZ3 170 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 C12orf57Q99622 126 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 IER3IP1Q9Y5U9 82 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 ABCA4P78363 2273 aa2□□□□□ -2.09
SCFD1-208ENST00000553278 CUL7Q14999 1698 aa1.99□□□□□ -2.09
SCFD1-208ENST00000553278 C4orf33Q8N1A6 199 aa1.99□□□□□ -2.09
SCFD1-208ENST00000553278 Q8N8P6 123 aa1.99□□□□□ -2.09
SCFD1-208ENST00000553278 BET1LQ9NYM9 111 aa1.99□□□□□ -2.09
SCFD1-208ENST00000553278 C9orf153Q5TBE3 101 aa1.98□□□□□ -2.09
SCFD1-208ENST00000553278 IFT140Q96RY7 1462 aa1.98□□□□□ -2.09
SCFD1-208ENST00000553278 QRICH2Q9H0J4 1663 aa1.98□□□□□ -2.09
SCFD1-208ENST00000553278 ATP6V1G2-DDX39BF2Z307 99 aa1.97□□□□□ -2.09
SCFD1-208ENST00000553278 RBM3P98179 157 aaKnown RBP1.97□□□□□ -2.09
SCFD1-208ENST00000553278 KLKP1Q107X0 134 aa1.97□□□□□ -2.09
SCFD1-208ENST00000553278 C10orf99Q6UWK7 81 aa1.97□□□□□ -2.09
SCFD1-208ENST00000553278 KDM6BO15054 1643 aa1.96□□□□□ -2.1
SCFD1-208ENST00000553278 CCL8P80075 99 aa1.96□□□□□ -2.1
SCFD1-208ENST00000553278 C8orf59Q8N0T1 100 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-208ENST00000553278 RBBP6Q7Z6E9 1792 aaKnown RBP1.95□□□□□ -2.1
SCFD1-208ENST00000553278 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 A0A1W2PPM0 123 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 CCL3L1P16619 93 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 SSBP1Q04837 148 aaKnown RBP1.95□□□□□ -2.1
SCFD1-208ENST00000553278 INSL4Q14641 139 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 ZNF818PQ6ZRF7 136 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 GTF2H5Q6ZYL4 71 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 C20orf197Q8N268 126 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 MUC6Q6W4X9 2439 aa1.95□□□□□ -2.1
SCFD1-208ENST00000553278 CNTRLQ7Z7A1 2325 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 RBAKDNA6NC62 111 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 UBE2D1P51668 147 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 FAM74A4Q5TZK3 123 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 SVBPQ8N300 66 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 C14orf144Q96I85 54 aa1.94□□□□□ -2.1
SCFD1-208ENST00000553278 TMEM14BQ9NUH8 114 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms