RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CRIP1P50238 77 aa11.48□□□□□ -0.57
CUX1-214ENST00000550008 RBAKDNA6NC62 111 aa11.47□□□□□ -0.57
CUX1-214ENST00000550008 MBD6Q96DN6 1003 aa11.47□□□□□ -0.57
CUX1-214ENST00000550008 PRADC1Q9BSG0 188 aa11.47□□□□□ -0.57
CUX1-214ENST00000550008 LINC01559Q495D7 138 aa11.47□□□□□ -0.57
CUX1-214ENST00000550008 A0A1B0GXF2 115 aa11.46□□□□□ -0.57
CUX1-214ENST00000550008 TSPAN13O95857 204 aa11.46□□□□□ -0.57
CUX1-214ENST00000550008 ADAMTSL5Q6ZMM2 481 aa11.46□□□□□ -0.57
CUX1-214ENST00000550008 K7ERJ3 54 aa11.46□□□□□ -0.57
CUX1-214ENST00000550008 C10orf126Q8N4M7 172 aa11.46□□□□□ -0.58
CUX1-214ENST00000550008 F8VRH5 84 aa11.46□□□□□ -0.58
CUX1-214ENST00000550008 ATP6V0BQ99437 205 aa11.46□□□□□ -0.58
CUX1-214ENST00000550008 FREM2Q5SZK8 3169 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 CCL24O00175 119 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 SPINK8P0C7L1 97 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 GAGE2BQ13066 116 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 GAGE2EQ4V326 116 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 MRPL53Q96EL3 112 aaKnown RBP11.45□□□□□ -0.58
CUX1-214ENST00000550008 PGPEP1Q9NXJ5 209 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 GAGE2DQ9UEU5 116 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 TSSC4Q9Y5U2 329 aaPredicted RBP11.45□□□□□ -0.58
CUX1-214ENST00000550008 PRSS29PA6NIE9 313 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 AZU1P20160 251 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 SMAD5-AS1Q9Y6J3 95 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 ZFAND6Q6FIF0 208 aa11.45□□□□□ -0.58
CUX1-214ENST00000550008 Q8N1Y9 231 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 LENEPQ9Y5L5 61 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 HECTD1Q9ULT8 2610 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 C2orf70A6NJV1 201 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 PMVKQ15126 192 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 SCGB1A1P11684 91 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 MYCNOSP40205 109 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 EBI3Q14213 229 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 BVES-AS1Q5T3Y7 98 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 TMEM61Q8N0U2 210 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 ZNF48Q96MX3 618 aaPredicted RBP11.44□□□□□ -0.58
CUX1-214ENST00000550008 A0A096LPF7 62 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 C9orf47Q6ZRZ4 202 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 WFDC11Q8NEX6 87 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 RNF114Q9Y508 228 aa11.44□□□□□ -0.58
CUX1-214ENST00000550008 TIMM21Q9BVV7 248 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 A0A087WX48 190 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 I3L3M4 83 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 RPL39P62891 51 aaKnown RBP11.43□□□□□ -0.58
CUX1-214ENST00000550008 ZFAND3Q9H8U3 227 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 MDFICQ9P1T7 246 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 RAI1Q7Z5J4 1906 aaPredicted RBP11.43□□□□□ -0.58
CUX1-214ENST00000550008 VWC2LB2RUY7 222 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 FOXI2Q6ZQN5 318 aa11.43□□□□□ -0.58
CUX1-214ENST00000550008 ETDBQ3ZM63 59 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 AVPP01185 164 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 CTRLP40313 264 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 TRBV7-9A0A0J9YWB2 115 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 IGLV2-11P01706 119 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 C20orf173Q96LM9 149 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 REV3LO60673 3130 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 FSTL3O95633 263 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 SUMO4Q6EEV6 95 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 U3KQE9 123 aa11.42□□□□□ -0.58
CUX1-214ENST00000550008 HLA-DRB4P13762 266 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 LINC00158P58513 81 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 HLA-DRB4X5D2U9 266 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 A8MWV9 139 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 C1QTNF4Q9BXJ3 329 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 ERG28Q9UKR5 140 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 LINC01545Q5VT33 79 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 NOP10Q9NPE3 64 aaKnown RBP11.41□□□□□ -0.58
CUX1-214ENST00000550008 NBEAQ8NFP9 2946 aa11.41□□□□□ -0.58
CUX1-214ENST00000550008 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.4□□□□□ -0.58
CUX1-214ENST00000550008 IGKV2-29A2NJV5 120 aaPredicted RBP11.4□□□□□ -0.58
CUX1-214ENST00000550008 LINC01549A6NIU2 74 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 DNAL4O96015 105 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 Q6ZQT7 251 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 C20orf78Q9BR46 151 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 Q8N6K4 173 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 PLEKHB2Q96CS7 222 aa11.4□□□□□ -0.58
CUX1-214ENST00000550008 AMTNQ6UX39 209 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 PRIMA1Q86XR5 153 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 GPHB5Q86YW7 130 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 RHODO00212 210 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 BOD1L1Q8NFC6 3051 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 MALP21145 153 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 C9orf118A6NHY6 69 aa11.39□□□□□ -0.59
CUX1-214ENST00000550008 MYMXA0A1B0GTQ4 84 aa11.38□□□□□ -0.59
CUX1-214ENST00000550008 GAGE6Q13070 117 aa11.38□□□□□ -0.59
CUX1-214ENST00000550008 ZNF493Q6ZR52 646 aa11.38□□□□□ -0.59
CUX1-214ENST00000550008 DLX4Q92988 240 aaPredicted RBP11.38□□□□□ -0.59
CUX1-214ENST00000550008 GAGE12HA6NDE8 117 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 CITED1Q99966 193 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 CFAP161Q6P656 301 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 CITED2Q99967 270 aaPredicted RBP11.37□□□□□ -0.59
CUX1-214ENST00000550008 CMC4P56277 68 aaPredicted RBP11.37□□□□□ -0.59
CUX1-214ENST00000550008 KRTAP10-9P60411 292 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 FRYQ5TBA9 3013 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 M0R2P5 195 aa11.37□□□□□ -0.59
CUX1-214ENST00000550008 TRBV25-1A0A075B6N4 114 aa11.36□□□□□ -0.59
CUX1-214ENST00000550008 IGHG4P01861 327 aa11.36□□□□□ -0.59
CUX1-214ENST00000550008 ZNF843Q8N446 348 aa11.36□□□□□ -0.59
CUX1-214ENST00000550008 AKAP13Q12802 2813 aa11.36□□□□□ -0.59
CUX1-214ENST00000550008 K7EMT4 169 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms