RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 ODF3Q96PU9 254 aa12.26□□□□□ -0.45
CHMP1A-204ENST00000547687 SCRT2Q9NQ03 307 aa12.26□□□□□ -0.45
CHMP1A-204ENST00000547687 UQCR10Q9UDW1 63 aa12.26□□□□□ -0.45
CHMP1A-204ENST00000547687 HSBP1L1C9JCN9 74 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 SPRY2O43597 315 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 HBDP02042 147 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 IGLL1P15814 213 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 ZNF25P17030 456 aaPredicted RBP12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 FXYD7P58549 80 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 NXT2Q9NPJ8 142 aaKnown RBP12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 LINC01546A6NGU7 62 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 M0R143 59 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 SAMD5Q5TGI4 173 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 FAM159AQ6UWV7 190 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 DYNLRB2Q8TF09 96 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 TMEM208Q9BTX3 173 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 MCRIP2Q9BUT9 160 aaKnown RBP12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 SNHG12Q9BXW3 62 aa12.25□□□□□ -0.45
CHMP1A-204ENST00000547687 TRAV12-3A0A0B4J271 114 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 C7orf71A4D174 169 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 EREGO14944 169 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 IGKV3-20P01619 116 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 RNASE3P12724 160 aaKnown RBP12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 BEAN1Q3B7T3 259 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 TMEM61Q8N0U2 210 aa12.24□□□□□ -0.45
CHMP1A-204ENST00000547687 TRAV26-2A0A0B4J265 109 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 DEFB114Q30KQ6 69 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 LINC01545Q5VT33 79 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 NRACQ8N912 160 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 DUSP14O95147 198 aaKnown RBP12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 MRPL52Q86TS9 123 aaKnown RBP12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 Q8N8P6 123 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 MRAP2Q96G30 205 aa12.23□□□□□ -0.45
CHMP1A-204ENST00000547687 RBX1P62877 108 aa12.22□□□□□ -0.45
CHMP1A-204ENST00000547687 AGRNO00468 2067 aa12.22□□□□□ -0.45
CHMP1A-204ENST00000547687 CD300EQ496F6 205 aaPredicted RBP12.21□□□□□ -0.45
CHMP1A-204ENST00000547687 FOXI2Q6ZQN5 318 aa12.21□□□□□ -0.45
CHMP1A-204ENST00000547687 DPH3P1Q9H4G8 78 aa12.21□□□□□ -0.45
CHMP1A-204ENST00000547687 hDV102S1A0JD36 115 aa12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 TSPOP30536 169 aa12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 Q6ZN92 141 aa12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 DEFB125Q8N687 156 aa12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 C14orf178Q8N769 122 aaPredicted RBP12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 PMCHL2Q9BQD1 86 aa12.21□□□□□ -0.46
CHMP1A-204ENST00000547687 IGLV2-18A0A075B6J9 118 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 TRAV12-2A0A075B6T6 113 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 FCER1GP30273 86 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 CDKN1BP46527 198 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 CD7P09564 240 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 LINC00482Q8N8I6 264 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 IFI27L1Q96BM0 104 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 ST20Q9HBF5 79 aa12.2□□□□□ -0.46
CHMP1A-204ENST00000547687 NPSP0C0P6 89 aa12.19□□□□□ -0.46
CHMP1A-204ENST00000547687 SPINK13Q1W4C9 94 aa12.19□□□□□ -0.46
CHMP1A-204ENST00000547687 WFDC9Q8NEX5 89 aa12.19□□□□□ -0.46
CHMP1A-204ENST00000547687 NXPH4O95158 308 aa12.18□□□□□ -0.46
CHMP1A-204ENST00000547687 HNRNPA3P51991 378 aaKnown RBP12.18□□□□□ -0.46
CHMP1A-204ENST00000547687 AP1S3Q96PC3 154 aa12.18□□□□□ -0.46
CHMP1A-204ENST00000547687 TRAV2A0A0B4J234 112 aa12.18□□□□□ -0.46
CHMP1A-204ENST00000547687 KPRPQ5T749 579 aaPredicted RBP12.18□□□□□ -0.46
CHMP1A-204ENST00000547687 MGPP08493 103 aa12.17□□□□□ -0.46
CHMP1A-204ENST00000547687 DEFB131AP59861 70 aa12.17□□□□□ -0.46
CHMP1A-204ENST00000547687 LGALS9BQ3B8N2 356 aa12.17□□□□□ -0.46
CHMP1A-204ENST00000547687 LGALS9CQ6DKI2 356 aa12.17□□□□□ -0.46
CHMP1A-204ENST00000547687 AMTNQ6UX39 209 aa12.17□□□□□ -0.46
CHMP1A-204ENST00000547687 KNCNA6PVL3 124 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 SAP30O75446 220 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 LAGE3Q14657 143 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 SPAG8Q99932 426 aaPredicted RBP12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 IGHV3-16A0A0C4DH30 117 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 RASL10AQ92737 203 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 C18orf15Q96N68 181 aa12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 ZNF256Q9Y2P7 627 aaPredicted RBP12.16□□□□□ -0.46
CHMP1A-204ENST00000547687 IGHV1OR15-1A0A075B7D0 117 aa12.15□□□□□ -0.46
CHMP1A-204ENST00000547687 TRAV25A0A0B4J276 109 aa12.15□□□□□ -0.46
CHMP1A-204ENST00000547687 COL7A1Q02388 2944 aa12.15□□□□□ -0.46
CHMP1A-204ENST00000547687 SMIM17P0DL12 118 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 KRTAP10-11P60412 298 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 POM121L12Q8N7R1 296 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 C9orf85Q96MD7 179 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 C20orf78Q9BR46 151 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 SMIM2Q9BVW6 85 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 MRPS16Q9Y3D3 137 aaKnown RBP12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 KIF25-AS1Q9Y6Z4 181 aa12.15□□□□□ -0.47
CHMP1A-204ENST00000547687 SUMO2P61956 95 aaKnown RBP12.14□□□□□ -0.47
CHMP1A-204ENST00000547687 CFAP161Q6P656 301 aa12.14□□□□□ -0.47
CHMP1A-204ENST00000547687 Q8N1Y9 231 aa12.14□□□□□ -0.47
CHMP1A-204ENST00000547687 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
CHMP1A-204ENST00000547687 H3BMM0 161 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 HLA-DRB4P13762 266 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 BATFQ16520 125 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 RPL39LQ96EH5 51 aaKnown RBP12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 MAP6D1Q9H9H5 199 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 HLA-DRB4X5D2U9 266 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 PPP1R17O96001 155 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 LINC00315P59091 139 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 JPT2Q9H910 190 aa12.13□□□□□ -0.47
CHMP1A-204ENST00000547687 A8MTW9 85 aa12.12□□□□□ -0.47
CHMP1A-204ENST00000547687 IGLV1-51P01701 117 aa12.11□□□□□ -0.47
CHMP1A-204ENST00000547687 SLC25A34Q6PIV7 304 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms