RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ZFP82Q8N141 532 aa8.76□□□□□ -1.01
RTN3-213ENST00000543552 DMBT1Q9UGM3 2413 aaPredicted RBP8.75□□□□□ -1.01
RTN3-213ENST00000543552 LTAP01374 205 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 C1QBP02746 253 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 S100A9P06702 114 aaKnown RBP8.75□□□□□ -1.01
RTN3-213ENST00000543552 AKR1C3P42330 323 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 LINC01559Q495D7 138 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 UFSP1Q6NVU6 142 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 KCNIP4Q6PIL6 250 aa8.75□□□□□ -1.01
RTN3-213ENST00000543552 TRBV10-1A0A0K0K1A3 114 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 GRIFINA4D1Z8 144 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 UMAD1C9J7I0 102 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 M0R381 172 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 CRIP1P50238 77 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 ZNF674Q2M3X9 581 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 C14orf178Q8N769 122 aaPredicted RBP8.74□□□□□ -1.01
RTN3-213ENST00000543552 SFRP2Q96HF1 295 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 SAMD10Q9BYL1 202 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 JPT2Q9H910 190 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 SRRM2Q9UQ35 2752 aaKnown RBP8.74□□□□□ -1.01
RTN3-213ENST00000543552 HERC1Q15751 4861 aa8.74□□□□□ -1.01
RTN3-213ENST00000543552 A0A087WX48 190 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 G3V3Q6 166 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 PFDN1O60925 122 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 RPL36AP83881 106 aaKnown RBP8.73□□□□□ -1.01
RTN3-213ENST00000543552 ZNF345Q14585 488 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 ELOBQ15370 118 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 DAZ4Q86SG3 579 aaKnown RBP8.73□□□□□ -1.01
RTN3-213ENST00000543552 RPL36ALQ969Q0 106 aaKnown RBP8.73□□□□□ -1.01
RTN3-213ENST00000543552 CHCHD7Q9BUK0 85 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 DAZ3Q9NR90 486 aaKnown RBP8.73□□□□□ -1.01
RTN3-213ENST00000543552 CYTL1Q9NRR1 136 aa8.73□□□□□ -1.01
RTN3-213ENST00000543552 A0A087WWL8 130 aa8.72□□□□□ -1.01
RTN3-213ENST00000543552 TMSB15BA0A087X1C1 80 aa8.72□□□□□ -1.01
RTN3-213ENST00000543552 SMR3BP02814 79 aaPredicted RBP8.72□□□□□ -1.01
RTN3-213ENST00000543552 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.72□□□□□ -1.01
RTN3-213ENST00000543552 MYCBP2O75592 4640 aa8.71□□□□□ -1.01
RTN3-213ENST00000543552 PAGE4O60829 102 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 ATP6V1G1O75348 118 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 EIF5AP63241 154 aaKnown RBP8.71□□□□□ -1.02
RTN3-213ENST00000543552 NIT1Q86X76 327 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 Q8N3U1 123 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 KCNRGQ8N5I3 272 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 FAM213BQ8TBF2 198 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 SFT2D1Q8WV19 159 aa8.71□□□□□ -1.02
RTN3-213ENST00000543552 TRBV7-3A0A075B6L6 115 aa8.7□□□□□ -1.02
RTN3-213ENST00000543552 CXCL1P09341 107 aa8.7□□□□□ -1.02
RTN3-213ENST00000543552 Q9UF83 564 aa8.7□□□□□ -1.02
RTN3-213ENST00000543552 IGKV2D-24A0A075B6R9 120 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 A0A0D9SG52 128 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 KANTRA0A1W2PQU2 76 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 LECT2O14960 151 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 RAB4BP61018 213 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 PKIAP61925 76 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 HAMPP81172 84 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 Q0VG73 95 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 Q8N976 141 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 MBD3L1Q8WWY6 194 aa8.69□□□□□ -1.02
RTN3-213ENST00000543552 ZNF471Q9BX82 626 aaPredicted RBP8.69□□□□□ -1.02
RTN3-213ENST00000543552 HMSDA8MTL9 139 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 UBE2D3P61077 147 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 UBE2D2P62837 147 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 ZNF56Q15929 161 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 BAGE2Q86Y30 109 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 OR10G8Q8NGN5 311 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 KLK12Q9UKR0 248 aa8.68□□□□□ -1.02
RTN3-213ENST00000543552 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.67□□□□□ -1.02
RTN3-213ENST00000543552 SCO2A0A1W2PP80 73 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 RBFOX3A6NFN3 312 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 SMLR1H3BR10 107 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 BCL2L11O43521 198 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 PLA2G1BP04054 148 aaKnown RBP8.67□□□□□ -1.02
RTN3-213ENST00000543552 WFDC2Q14508 124 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 SPANXN1Q5VSR9 72 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 Q6ZSA8 131 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 BAALCQ8WXS3 180 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 UBE2WQ96B02 151 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 DNAH8Q96JB1 4490 aa8.67□□□□□ -1.02
RTN3-213ENST00000543552 TRBV6-8A0A0A6YYG3 113 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 A0A1B0GV50 99 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 TMEM262E9PQX1 116 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 CRPP02741 224 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 H2AFB1P0C5Y9 115 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 OR5AL1P0C617 328 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 SMIM17P0DL12 118 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 C14orf177Q52M58 125 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 TMEM97Q5BJF2 176 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 OR10AG1Q8NH19 301 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 MLST8Q9BVC4 326 aa8.66□□□□□ -1.02
RTN3-213ENST00000543552 TEX46H3BTG2 121 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 SNAI2O43623 268 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 RPL19P84098 196 aaKnown RBP8.65□□□□□ -1.02
RTN3-213ENST00000543552 PRR27Q6MZM9 219 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 ATRAIDQ6UW56 229 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 AP1S3Q96PC3 154 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 C1orf43Q9BWL3 253 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 MANBALQ9NQG1 85 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 FAM30AQ9NZY2 134 aa8.65□□□□□ -1.02
RTN3-213ENST00000543552 F5H697 171 aa8.64□□□□□ -1.03
RTN3-213ENST00000543552 EIF5AL1Q6IS14 154 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms