RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, human

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-209	ENST00000540747	KLF12	Q9Y4X4	402 aa		4.92	□□□□□ -1.62
YBX3-209	ENST00000540747	TRGV2	A0A075B6R0	118 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	TRGV1	A0A0A0MS02	117 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747		A0A1W2PRE2	83 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	C7orf71	A4D174	169 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	TSTD3	H0UI37	97 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	FAM229A	H3BQW9	127 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747		J3KRW8	73 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	PAX4	O43316	350 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	ZNF253	O75346	499 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	GCG	P01275	180 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	SLC25A5	P05141	298 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	CRISP2	P16562	243 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	CRYBA4	P53673	196 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	PKIA	P61925	76 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	SUMO1	P63165	101 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	FHL2	Q14192	279 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	JOSD1	Q15040	202 aa	Predicted RBP	4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	IBA57	Q5T440	356 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	C10orf113	Q5VZT2	155 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	WFDC10B	Q8IUB3	73 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	MRPL53	Q96EL3	112 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	PRO0255	Q9UI72	69 aa		4.91	□□□□□ -1.62
YBX3-209	ENST00000540747	PGPEP1L	A6NFU8	196 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747		M0R3E3	92 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	GATC	O43716	136 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	MGST1	P10620	155 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	MRPL23	Q16540	153 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	PRR9	Q5T870	116 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	WDR73	Q6P4I2	378 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747		Q6ZSA8	131 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	ZFAND2A	Q8N6M9	145 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	NTN5	Q8WTR8	489 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	PAXX	Q9BUH6	204 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	OSTC	Q9NRP0	149 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	FAM30A	Q9NZY2	134 aa		4.9	□□□□□ -1.63
YBX3-209	ENST00000540747	TRBV19	A0A075B6N1	114 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	TRAV5	A0A0B4J249	113 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	OR10J4	P0C629	311 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	KRTAP10-4	P60372	401 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	UBE2L3	P68036	154 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	ERCC8	Q13216	396 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	SLA	Q13239	276 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	CENPW	Q5EE01	88 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747		Q6ZQT7	251 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	NEGR1	Q7Z3B1	354 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	C8orf49	Q96NF6	230 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	AGPAT4-IT1	Q9H0P7	198 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	MRPL18	Q9H0U6	180 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	MRPL16	Q9NX20	251 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	TP53TG3	Q9ULZ0	132 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	HHLA3	Q9XRX5	114 aa		4.89	□□□□□ -1.63
YBX3-209	ENST00000540747	TRBV20OR9-2	A0A075B6H5	130 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	TRAV9-2	A0A087WT02	112 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	IGLV5-52	A0A0A0MRZ9	124 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747		J3QL48	77 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747		K7EN84	100 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747		K7EQD1	137 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	SCGB1D1	O95968	90 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	IGHV3-53	P01767	116 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	TIRAP	P58753	221 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	RAB4B	P61018	213 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	IQCJ	Q1A5X6	159 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	C9orf47	Q6ZRZ4	202 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	BAGE3	Q86Y29	109 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	BAGE2	Q86Y30	109 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	FAM167A-AS1	Q96KT0	104 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	LINC00477	Q96M19	166 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	SLC25A2	Q9BXI2	301 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	GNB1L	Q9BYB4	327 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	PRO1933	Q9H354	126 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	TMEM14C	Q9P0S9	112 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747		V9GYV3	84 aa		4.88	□□□□□ -1.63
YBX3-209	ENST00000540747	IGHV1OR15-1	A0A075B7D0	117 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	MT-ND6	P03923	174 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	CRYGD	P07320	174 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	GZMB	P10144	247 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	EVI2A	P22794	236 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	RNASE4	P34096	147 aa	Known RBP	4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	UBE2G1	P62253	170 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	RAN	P62826	216 aa	Known RBP	4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	ZNF415	Q09FC8	603 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	PDE6H	Q13956	83 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	C10orf126	Q8N4M7	172 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747		Q8N814	137 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	CMTM2	Q8TAZ6	248 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	RASL10A	Q92737	203 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	ZNF479	Q96JC4	524 aa		4.87	□□□□□ -1.63
YBX3-209	ENST00000540747	TRBV7-9	A0A0J9YWB2	115 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	PGP	A6NDG6	321 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	IBA57-AS1	B1ANH7	110 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	GGTLC3	B5MD39	225 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	PEX7	O00628	323 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	NBEAP1	P0C6P0	100 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	PYY	P10082	97 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	HIST1H1E	P10412	219 aa	Known RBP	4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	GYPE	P15421	78 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	DDT	P30046	118 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747	SRI	P30626	198 aa		4.86	□□□□□ -1.63
YBX3-209	ENST00000540747		Q0VG73	95 aa		4.86	□□□□□ -1.63

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