RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PTH2Q96A98 100 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 RAX2Q96IS3 184 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 SCGB3A1Q96QR1 104 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 LINC00467Q9BRT7 94 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 MCRIP2Q9BUT9 160 aaKnown RBP4.93□□□□□ -1.62
USP28-206ENST00000538224 EDA2RQ9HAV5 297 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 HIGD1BQ9P298 99 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 CYSLTR1Q9Y271 337 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 COX11Q9Y6N1 276 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 KIF25-AS1Q9Y6Z4 181 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 CSMD1Q96PZ7 3565 aa4.93□□□□□ -1.62
USP28-206ENST00000538224 MAP1AP78559 2803 aaPredicted RBP4.93□□□□□ -1.62
USP28-206ENST00000538224 MUC4Q99102 2169 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 APCP25054 2843 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 VPS13CQ709C8 3753 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 NMUP48645 174 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 LINC00315P59091 139 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 DEFB131AP59861 70 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 RHOHQ15669 191 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 ZNF56Q15929 161 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 C2orf66Q6UXQ4 117 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 C2orf91Q6ZV80 131 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 Q8N1Y9 231 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 WFDC11Q8NEX6 87 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 RPL39LQ96EH5 51 aaKnown RBP4.92□□□□□ -1.62
USP28-206ENST00000538224 TMEM141Q96I45 108 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 C16orf95Q9H693 158 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 TMEM160Q9NX00 188 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 DKK2Q9UBU2 259 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 ZNF256Q9Y2P7 627 aaPredicted RBP4.92□□□□□ -1.62
USP28-206ENST00000538224 PTPN13Q12923 2485 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 POLQO75417 2590 aa4.92□□□□□ -1.62
USP28-206ENST00000538224 MXRA5Q9NR99 2828 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ITPR3Q14573 2671 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ABCA12Q86UK0 2595 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 EPG5Q9HCE0 2579 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ZANQ9Y493 2812 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 TRAV12-2A0A075B6T6 113 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 TRBV27A0A0K0K1C4 114 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 A0A1B0GV72 72 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 A8MWV9 139 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 F5H697 171 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 H3BMM0 161 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 RHODO00212 210 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 INSP01308 110 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 IGKV3-20P01619 116 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 RNASE1P07998 156 aaKnown RBP4.91□□□□□ -1.62
USP28-206ENST00000538224 POLR2KP53803 58 aaKnown RBP4.91□□□□□ -1.62
USP28-206ENST00000538224 RIPPLY3P57055 190 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 FHL3Q13643 280 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 DEFB136Q30KP8 78 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 NSUN5P1Q3KNT7 163 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 OCIAD2Q56VL3 154 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ZC2HC1BQ5TFG8 222 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ADAMTSL5Q6ZMM2 481 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 TMEM61Q8N0U2 210 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 ZNF418Q8TF45 676 aaPredicted RBP4.91□□□□□ -1.62
USP28-206ENST00000538224 TIMM17AQ99595 171 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 SPXQ9BT56 116 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 MAP6D1Q9H9H5 199 aa4.91□□□□□ -1.62
USP28-206ENST00000538224 MRPL35Q9NZE8 188 aaKnown RBP4.91□□□□□ -1.62
USP28-206ENST00000538224 TSSC4Q9Y5U2 329 aaPredicted RBP4.91□□□□□ -1.62
USP28-206ENST00000538224 TEX15Q9BXT5 2789 aa4.9□□□□□ -1.62
USP28-206ENST00000538224 SDHAF1A6NFY7 115 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 OR11H12B2RN74 326 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 M0R2P5 195 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 HERVK_113P61574 105 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 TAL2Q16559 108 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 RNF151Q2KHN1 245 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 DEFB114Q30KQ6 69 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 ZNF876PQ49A33 203 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 FAM74A4Q5TZK3 123 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 ZFP2Q6ZN57 461 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 NEXN-AS1Q8NBZ9 246 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 OR11H2Q8NH07 326 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 DLX4Q92988 240 aaPredicted RBP4.9□□□□□ -1.63
USP28-206ENST00000538224 DUX3Q96PT4 197 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 HHLA3Q9XRX5 114 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 SELENOKQ9Y6D0 94 aa4.9□□□□□ -1.63
USP28-206ENST00000538224 A0A087WWL8 130 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 KNCNA6PVL3 124 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 M0QY20 66 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 CCL24O00175 119 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 NDUFA7O95182 113 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 PMVKQ15126 192 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 C18orf65Q6ZTR6 163 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 MTURNQ8N3F0 131 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 OR4C5Q8NGB2 326 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 BAALCQ8WXS3 180 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 CHAC1Q9BUX1 264 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 YAE1D1Q9NRH1 226 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 MDFICQ9P1T7 246 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 TP53TG1Q9Y2A0 90 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 SVEP1Q4LDE5 3571 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 KMT2BQ9UMN6 2715 aaPredicted RBP4.89□□□□□ -1.63
USP28-206ENST00000538224 TENM4Q6N022 2769 aa4.89□□□□□ -1.63
USP28-206ENST00000538224 E9PLD3 99 aa4.88□□□□□ -1.63
USP28-206ENST00000538224 H3BRM9 83 aa4.88□□□□□ -1.63
USP28-206ENST00000538224 I3L3M4 83 aa4.88□□□□□ -1.63
USP28-206ENST00000538224 TAX1BP3O14907 124 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms