RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MGPP08493 103 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 FHL2Q14192 279 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 PIK3CD-AS1Q5SR53 167 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 C14orf178Q8N769 122 aaPredicted RBP9.65□□□□□ -0.86
CD44-224ENST00000526669 C18orf15Q96N68 181 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 AP1S3Q96PC3 154 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 CTDSP1Q9GZU7 261 aa9.65□□□□□ -0.86
CD44-224ENST00000526669 IGHV4-4A0A075B6R2 117 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 CRYGDP07320 174 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 TRGC1P0CF51 173 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 WDR73Q6P4I2 378 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 TMEM88Q6PEY1 159 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 NDUFAF3Q9BU61 184 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 CNFNQ9BYD5 112 aa9.64□□□□□ -0.87
CD44-224ENST00000526669 TRAV26-1A0A087WT03 109 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 A0A087WWC5 75 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 IGLL5B9A064 214 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 SMIM17P0DL12 118 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 EVI2AP22794 236 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 RIGQ13278 110 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 ZNF56Q15929 161 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 UFSP1Q6NVU6 142 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 CEMP1Q6PRD7 247 aaPredicted RBP9.63□□□□□ -0.87
CD44-224ENST00000526669 Q6ZSN1 163 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 URGCP-MRPS24S4R325 110 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 ALMS1Q8TCU4 4167 aa9.63□□□□□ -0.87
CD44-224ENST00000526669 NUPR2A6NF83 97 aa9.62□□□□□ -0.87
CD44-224ENST00000526669 GATA1P15976 413 aaPredicted RBP9.62□□□□□ -0.87
CD44-224ENST00000526669 CAMPP49913 170 aa9.62□□□□□ -0.87
CD44-224ENST00000526669 KIF25-AS1Q9Y6Z4 181 aa9.62□□□□□ -0.87
CD44-224ENST00000526669 LOC100131303A0A0U1RQF7 123 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 F5H697 171 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 RHODO00212 210 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 PAX4O43316 350 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 CRYBA4P53673 196 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 KCNIP4Q6PIL6 250 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 ZFP2Q6ZN57 461 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 DPH3P1Q9H4G8 78 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 HHLA3Q9XRX5 114 aa9.61□□□□□ -0.87
CD44-224ENST00000526669 ATP6V1G1O75348 118 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 P0DMU3 169 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 FAM231AP0DMU4 169 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 FAM231CP0DMU5 169 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 S100PP25815 95 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 LINC00315P59091 139 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 SMIM15Q7Z3B0 74 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 SLC25A29Q8N8R3 303 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 VSIG2Q96IQ7 327 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 PRO0255Q9UI72 69 aa9.6□□□□□ -0.87
CD44-224ENST00000526669 KLK5Q9Y337 293 aaPredicted RBP9.6□□□□□ -0.87
CD44-224ENST00000526669 DNAH1Q9P2D7 4330 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 A0A1B0GXF2 115 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 K7EQD1 137 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 NUDT3O95989 172 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 HBBP68871 147 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 IMMP2LQ96T52 175 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 TMEM242Q9NWH2 141 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 VPS13DQ5THJ4 4388 aa9.59□□□□□ -0.87
CD44-224ENST00000526669 LYSTQ99698 3801 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 A0A096LPF7 62 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 TRAV26-2A0A0B4J265 109 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 C3orf84H3BNL1 204 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 CIDEAO60543 219 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 GYPEP15421 78 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 CASC10Q5T4H9 136 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 SUMO4Q6EEV6 95 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 CBLN2Q8IUK8 224 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 AMN1Q8IY45 258 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 BTF3L4Q96K17 158 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 TMEM191AQ9H0A3 160 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 Q9UF83 564 aa9.58□□□□□ -0.88
CD44-224ENST00000526669 RAB4BP61018 213 aa9.57□□□□□ -0.88
CD44-224ENST00000526669 SLAQ13239 276 aa9.57□□□□□ -0.88
CD44-224ENST00000526669 RHOHQ15669 191 aa9.57□□□□□ -0.88
CD44-224ENST00000526669 ATP5L2Q7Z4Y8 100 aa9.57□□□□□ -0.88
CD44-224ENST00000526669 RNF185Q96GF1 192 aa9.57□□□□□ -0.88
CD44-224ENST00000526669 TGIF2-C20orf24A0A0A6YYL0 155 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 A0A1B0GW15 77 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 TRBV6-4A0A1B0GX49 114 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 GAGE12JA6NER3 117 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 SCO1O75880 301 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 GAGE1Q13065 139 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 GAGE4Q13068 117 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 GAGE5Q13069 117 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 GAGE13Q4V321 117 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 PRADC1Q9BSG0 188 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 APLNQ9ULZ1 77 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 ICOSQ9Y6W8 199 aa9.56□□□□□ -0.88
CD44-224ENST00000526669 TRAV9-1A0A075B6T8 112 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 SMKR1H3BMG3 65 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 NCR2O95944 276 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 S100A8P05109 93 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 ELOBQ15370 118 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 GATD1Q8NB37 220 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 FAM210BQ96KR6 192 aa9.55□□□□□ -0.88
CD44-224ENST00000526669 DNAH6Q9C0G6 4158 aa9.54□□□□□ -0.88
CD44-224ENST00000526669 GAS8-AS1O95177 125 aa9.54□□□□□ -0.88
CD44-224ENST00000526669 RAB4AP20338 218 aa9.54□□□□□ -0.88
CD44-224ENST00000526669 MRPL51Q4U2R6 128 aaKnown RBP9.54□□□□□ -0.88
CD44-224ENST00000526669 FAM104BQ5XKR9 115 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms