RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 MIR22HGQ0VDD5 57 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 OR2T2Q6IF00 324 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 SVBPQ8N300 66 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 VSTM2AQ8TAG5 236 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 Q8TAT8 98 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 CHCHD2Q9Y6H1 151 aaPredicted RBP2.93□□□□□ -1.94
USP47-204ENST00000525078 KIAA1551Q9HCM1 1747 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 C10orf71Q711Q0 1435 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 SHANK1Q9Y566 2161 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 TNRC6CQ9HCJ0 1690 aaKnown RBP2.92□□□□□ -1.94
USP47-204ENST00000525078 SCN3AQ9NY46 2000 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 AKAP11Q9UKA4 1901 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 MCRIP1C9JLW8 97 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 GEMIN2O14893 280 aaKnown RBP2.92□□□□□ -1.94
USP47-204ENST00000525078 SNCGO76070 127 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 IGLV3-19P01714 112 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 KRTAP10-12P60413 245 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 PKIAP61925 76 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 PDE6HQ13956 83 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 C9orf153Q5TBE3 101 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 FOXI2Q6ZQN5 318 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 LYPD1Q8N2G4 141 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 SPTSSAQ969W0 71 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 DIDO1Q9BTC0 2240 aaKnown RBP2.92□□□□□ -1.94
USP47-204ENST00000525078 A0A1B0GUL6 1792 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 STRCQ7RTU9 1775 aa2.92□□□□□ -1.94
USP47-204ENST00000525078 ATG2AQ2TAZ0 1938 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 PXDNQ92626 1479 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 H3BRN7 92 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 ADCYAP1P18509 176 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 TPRXLQ17RH7 258 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 Q1T7F1 81 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 NCMAPQ5T1S8 102 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 LCE3CQ5T5A8 94 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 ZCCHC23Q6ZST2 131 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 ZNF833PQ6ZTB9 187 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 SLC25A26Q70HW3 274 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 C5orf17Q8NAS9 161 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 C4orf3Q8WVX3 66 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 RPRMQ9NS64 109 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 TMEM242Q9NWH2 141 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 RBBP6Q7Z6E9 1792 aaKnown RBP2.91□□□□□ -1.94
USP47-204ENST00000525078 HELZP42694 1942 aaKnown RBP2.91□□□□□ -1.94
USP47-204ENST00000525078 MYH4Q9Y623 1939 aa2.91□□□□□ -1.94
USP47-204ENST00000525078 COL11A1P12107 1806 aaPredicted RBP2.91□□□□□ -1.94
USP47-204ENST00000525078 RGPD8O14715 1765 aaPredicted RBP2.9□□□□□ -1.94
USP47-204ENST00000525078 RGPD2P0DJD1 1756 aa2.9□□□□□ -1.94
USP47-204ENST00000525078 LAMB2P55268 1798 aa2.9□□□□□ -1.94
USP47-204ENST00000525078 SCN7AQ01118 1682 aa2.9□□□□□ -1.95
USP47-204ENST00000525078 TRGV4A0A0C4DH28 118 aa2.9□□□□□ -1.95
USP47-204ENST00000525078 RNASE2P10153 161 aaKnown RBP2.9□□□□□ -1.95
USP47-204ENST00000525078 C1orf137Q5JT78 98 aa2.9□□□□□ -1.95
USP47-204ENST00000525078 LINC00304Q8N9R0 145 aa2.9□□□□□ -1.95
USP47-204ENST00000525078 DYNLRB2Q8TF09 96 aa2.9□□□□□ -1.95
USP47-204ENST00000525078 RGPD5Q99666 1765 aa2.89□□□□□ -1.95
USP47-204ENST00000525078 PIPP12273 146 aaPredicted RBP2.89□□□□□ -1.95
USP47-204ENST00000525078 IFITM1P13164 125 aa2.89□□□□□ -1.95
USP47-204ENST00000525078 PRRC2AP48634 2157 aaKnown RBP2.89□□□□□ -1.95
USP47-204ENST00000525078 S100A10P60903 97 aa2.89□□□□□ -1.95
USP47-204ENST00000525078 DUOX1Q9NRD9 1551 aa2.89□□□□□ -1.95
USP47-204ENST00000525078 NHSL1Q5SYE7 1610 aa2.89□□□□□ -1.95
USP47-204ENST00000525078 CICQ96RK0 1608 aaPredicted RBP2.89□□□□□ -1.95
USP47-204ENST00000525078 COL24A1Q17RW2 1714 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 TRAV17A0A0B4J275 112 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 SMIM31A0A1B0GVY4 71 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 F8W1H4 67 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 NDUFB6O95139 128 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 SPINK8P0C7L1 97 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 PIRTP0C851 137 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 P0C880 135 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 Q6AWC8 147 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 SPACA4Q8TDM5 124 aa2.88□□□□□ -1.95
USP47-204ENST00000525078 LSM10Q969L4 123 aaKnown RBP2.88□□□□□ -1.95
USP47-204ENST00000525078 ZSWIM8A7E2V4 1837 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 TRBV6-8A0A0A6YYG3 113 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 PVALEFA0A1B0GWK0 134 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 SPANXN1Q5VSR9 72 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 OR10AG1Q8NH19 301 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 KIAA1549Q9HCM3 1950 aa2.87□□□□□ -1.95
USP47-204ENST00000525078 MICAL3Q7RTP6 2002 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 HEATR5BQ9P2D3 2071 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 PRB4P10163 310 aaPredicted RBP2.86□□□□□ -1.95
USP47-204ENST00000525078 POLR2JP52435 117 aaKnown RBP2.86□□□□□ -1.95
USP47-204ENST00000525078 NPC2P61916 151 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 FAM74A1Q5RGS3 127 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 TTTY12Q9BZ98 90 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 ORMDL1Q9P0S3 153 aa2.86□□□□□ -1.95
USP47-204ENST00000525078 ZNF142P52746 1687 aaPredicted RBP2.85□□□□□ -1.95
USP47-204ENST00000525078 NHSQ6T4R5 1651 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 RGPD3A6NKT7 1758 aaPredicted RBP2.85□□□□□ -1.95
USP47-204ENST00000525078 RGPD4Q7Z3J3 1758 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 A0A1W2PRS3 328 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 IGKV1-17P01599 117 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 COX7CP15954 63 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 RPL7L1Q6DKI1 246 aaKnown RBP2.85□□□□□ -1.95
USP47-204ENST00000525078 UNQ5815/PRO19632Q6UWF5 114 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 Q6ZS92 163 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 FP248Q71RG6 208 aaPredicted RBP2.85□□□□□ -1.95
USP47-204ENST00000525078 LINC00526Q96FQ7 95 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 TXNDC17Q9BRA2 123 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms