RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ASAH2BP0C7U1 165 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 MGST1P10620 155 aaKnown RBP4.16□□□□□ -1.74
NUP54-218ENST00000515460 NPPCP23582 126 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 GCHFRP30047 84 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 DLX1P56177 255 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 VMA21Q3ZAQ7 101 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 SLC25A48Q6ZT89 311 aaKnown RBP4.16□□□□□ -1.74
NUP54-218ENST00000515460 MDP1Q86V88 176 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 C18orf15Q96N68 181 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 GPX7Q96SL4 187 aaPredicted RBP4.16□□□□□ -1.74
NUP54-218ENST00000515460 MGST2Q99735 147 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 PRSS27Q9BQR3 290 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 WFDC6Q9BQY6 131 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 TTTY10Q9BZA0 68 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 AGPAT4-IT1Q9H0P7 198 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 RETNQ9HD89 108 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 TAS2R4Q9NYW5 299 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 CACNG5Q9UF02 275 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 PLCE1Q9P212 2302 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 TRAV12-2A0A075B6T6 113 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 TRAV27A0A087WT01 109 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 C15orf62A8K5M9 175 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 EPM2AB3EWF7 344 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 H7C1H1 209 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 IGKCP01834 107 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 MSMBP08118 114 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 PYYP10082 97 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 GP9P14770 177 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 UBE2D3P61077 147 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 UBE2D2P62837 147 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 PMAIP1Q13794 54 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 MRGPRG-AS1Q2M3A8 158 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 WDR38Q5JTN6 314 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 TMEM170BQ5T4T1 132 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 LINC01590Q5TEZ4 76 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 SERTAD4-AS1Q5TG53 156 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 Q6ZSR3 168 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 ODF3L1Q8IXM7 274 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 EXOC3-AS1Q8N2X6 119 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 RPP25LQ8N5L8 163 aaKnown RBP4.15□□□□□ -1.75
NUP54-218ENST00000515460 POM121L12Q8N7R1 296 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 FGFBP3Q8TAT2 258 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 HDHD3Q9BSH5 251 aaPredicted RBP4.15□□□□□ -1.75
NUP54-218ENST00000515460 CHCHD5Q9BSY4 110 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 SHANK2-AS3Q9BTD1 123 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 ESM1Q9NQ30 184 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 ZNF256Q9Y2P7 627 aaPredicted RBP4.15□□□□□ -1.75
NUP54-218ENST00000515460 SELENOKQ9Y6D0 94 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 KIAA2026Q5HYC2 2103 aa4.15□□□□□ -1.75
NUP54-218ENST00000515460 DNAH7Q8WXX0 4024 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 IGKV1D-42A0A075B6H8 117 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 CHEK1O14757 476 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 NPYP01303 97 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 GYPBP06028 91 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 PATE4P0C8F1 98 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 KCTD18Q6PI47 426 aaPredicted RBP4.14□□□□□ -1.75
NUP54-218ENST00000515460 Q6ZQT7 251 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 ZNF493Q6ZR52 646 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 FOXL2NBQ6ZUU3 175 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 PDPNQ86YL7 162 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 C11orf53Q8IXP5 236 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 GATAD1Q8WUU5 269 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 ODF3Q96PU9 254 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 EMC6Q9BV81 110 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 SLC25A22Q9H936 323 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 DYNLRB1Q9NP97 96 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 PEMTQ9UBM1 199 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 SERP1Q9Y6X1 66 aa4.14□□□□□ -1.75
NUP54-218ENST00000515460 TRBV20OR9-2A0A075B6H5 130 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 SMIM26A0A096LP01 95 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 TRAV8-1A0A0A6YYK1 113 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 A0A0U1RQV1 116 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 MYMXA0A1B0GTQ4 84 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 K7ERJ3 54 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 SPINT2O43291 252 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 LYPD3O95274 346 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 IGHG2P01859 326 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 NPC2P61916 151 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 UBE2L3P68036 154 aaKnown RBP4.13□□□□□ -1.75
NUP54-218ENST00000515460 MRPS36P82909 103 aaKnown RBP4.13□□□□□ -1.75
NUP54-218ENST00000515460 DRAM1Q8N682 238 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 EPDR1Q9UM22 224 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 DNAH3Q8TD57 4116 aa4.13□□□□□ -1.75
NUP54-218ENST00000515460 RNF213Q63HN8 5207 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 IGLV3-9A0A075B6K5 115 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 A0A1B0GWA3 101 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 A0A1B0GXF2 115 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 C5orf63A6NC05 138 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 PRR32B1ATL7 298 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 LGALS9O00182 355 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 BGLAPP02818 100 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 CTLA4P16410 223 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 CCL8P80075 99 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 FAM201AQ5SY85 155 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 SMIM29Q86T20 159 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 GTSCR1Q86UQ5 136 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 PFN4Q8NHR9 129 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 NABP1Q96AH0 204 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 IFI27L1Q96BM0 104 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 R4GMQ9 66 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms