RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SELENOWP63302 87 aa1.42□□□□□ -2.18
NUP54-215ENST00000514313 EMX2Q04743 252 aa1.42□□□□□ -2.18
NUP54-215ENST00000514313 DSCR8Q96T75 97 aa1.42□□□□□ -2.18
NUP54-215ENST00000514313 SPATA8Q6RVD6 105 aa1.41□□□□□ -2.18
NUP54-215ENST00000514313 FAM103A1Q9BTL3 118 aaKnown RBP1.41□□□□□ -2.18
NUP54-215ENST00000514313 GNG7O60262 68 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 CCL3L1P16619 93 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 C20orf197Q8N268 126 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 SPTSSAQ969W0 71 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 LINC00470Q9BZP3 86 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 CCDC167Q9P0B6 97 aa1.4□□□□□ -2.19
NUP54-215ENST00000514313 K7EP13 123 aa1.39□□□□□ -2.19
NUP54-215ENST00000514313 ARL11Q969Q4 196 aa1.39□□□□□ -2.19
NUP54-215ENST00000514313 ZNF142P52746 1687 aaPredicted RBP1.39□□□□□ -2.19
NUP54-215ENST00000514313 AKAP11Q9UKA4 1901 aa1.38□□□□□ -2.19
NUP54-215ENST00000514313 IBTKQ9P2D0 1353 aaPredicted RBP1.38□□□□□ -2.19
NUP54-215ENST00000514313 PIPP12273 146 aaPredicted RBP1.38□□□□□ -2.19
NUP54-215ENST00000514313 RPL7L1Q6DKI1 246 aaKnown RBP1.38□□□□□ -2.19
NUP54-215ENST00000514313 C10orf82Q8WW14 230 aa1.38□□□□□ -2.19
NUP54-215ENST00000514313 NOTCH1P46531 2555 aa1.38□□□□□ -2.19
NUP54-215ENST00000514313 A6NIN4 97 aa1.37□□□□□ -2.19
NUP54-215ENST00000514313 NDUFB6O95139 128 aa1.37□□□□□ -2.19
NUP54-215ENST00000514313 RPRMQ9NS64 109 aa1.37□□□□□ -2.19
NUP54-215ENST00000514313 ASH1LQ9NR48 2969 aaKnown RBP1.37□□□□□ -2.19
NUP54-215ENST00000514313 GRIN2AQ12879 1464 aa1.37□□□□□ -2.19
NUP54-215ENST00000514313 MUC22E2RYF6 1773 aaPredicted RBP1.36□□□□□ -2.19
NUP54-215ENST00000514313 ZNF462Q96JM2 2506 aa1.36□□□□□ -2.19
NUP54-215ENST00000514313 A0A087WTM6 91 aa1.36□□□□□ -2.19
NUP54-215ENST00000514313 RBAKDNA6NC62 111 aa1.36□□□□□ -2.19
NUP54-215ENST00000514313 SNCGO76070 127 aa1.36□□□□□ -2.19
NUP54-215ENST00000514313 SARNPP82979 210 aaKnown RBP1.36□□□□□ -2.19
NUP54-215ENST00000514313 SSBP1Q04837 148 aaKnown RBP1.36□□□□□ -2.19
NUP54-215ENST00000514313 HIST1H1DP16402 221 aaKnown RBP1.35□□□□□ -2.19
NUP54-215ENST00000514313 C4orf33Q8N1A6 199 aa1.35□□□□□ -2.19
NUP54-215ENST00000514313 COX7B2Q8TF08 81 aa1.35□□□□□ -2.19
NUP54-215ENST00000514313 ABCA1O95477 2261 aa1.35□□□□□ -2.19
NUP54-215ENST00000514313 SPINK7P58062 85 aa1.34□□□□□ -2.19
NUP54-215ENST00000514313 S100A7L2Q5SY68 101 aa1.34□□□□□ -2.19
NUP54-215ENST00000514313 MYOM3Q5VTT5 1437 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 FAM25AB3EWG3 89 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 FAM25CB3EWG5 89 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 FAM25GB3EWG6 89 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 PDCD10Q9BUL8 212 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 SEC11CQ9BY50 192 aa1.33□□□□□ -2.2
NUP54-215ENST00000514313 FAM92AA1XBS5 289 aa1.31□□□□□ -2.2
NUP54-215ENST00000514313 CBLN1P23435 193 aa1.31□□□□□ -2.2
NUP54-215ENST00000514313 SPTSSBQ8NFR3 76 aa1.31□□□□□ -2.2
NUP54-215ENST00000514313 TANC1Q9C0D5 1861 aa1.31□□□□□ -2.2
NUP54-215ENST00000514313 ZNF469Q96JG9 3925 aaPredicted RBP1.3□□□□□ -2.2
NUP54-215ENST00000514313 FAM74A4Q5TZK3 123 aa1.3□□□□□ -2.2
NUP54-215ENST00000514313 MED13LQ71F56 2210 aa1.3□□□□□ -2.2
NUP54-215ENST00000514313 LAMB1P07942 1786 aa1.29□□□□□ -2.2
NUP54-215ENST00000514313 IFNA17P01571 189 aa1.29□□□□□ -2.2
NUP54-215ENST00000514313 AGPAT4-IT1Q9H0P7 198 aa1.29□□□□□ -2.2
NUP54-215ENST00000514313 V9GYV3 84 aa1.29□□□□□ -2.2
NUP54-215ENST00000514313 KIAA0100Q14667 2235 aaKnown RBP1.29□□□□□ -2.2
NUP54-215ENST00000514313 RBBP6Q7Z6E9 1792 aaKnown RBP1.29□□□□□ -2.2
NUP54-215ENST00000514313 PLXNA1Q9UIW2 1896 aa1.29□□□□□ -2.2
NUP54-215ENST00000514313 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
NUP54-215ENST00000514313 UBE2D1P51668 147 aa1.28□□□□□ -2.2
NUP54-215ENST00000514313 DAPK1P53355 1430 aa1.28□□□□□ -2.2
NUP54-215ENST00000514313 MCRIP1C9JLW8 97 aa1.27□□□□□ -2.21
NUP54-215ENST00000514313 MEIG1Q5JSS6 88 aa1.27□□□□□ -2.21
NUP54-215ENST00000514313 Q96NJ1 140 aa1.27□□□□□ -2.21
NUP54-215ENST00000514313 MAP2P11137 1827 aaKnown RBP1.26□□□□□ -2.21
NUP54-215ENST00000514313 TRBV7-1A0A0A6YYK4 115 aa1.26□□□□□ -2.21
NUP54-215ENST00000514313 F2Z2F3 143 aa1.26□□□□□ -2.21
NUP54-215ENST00000514313 PHIPQ8WWQ0 1821 aa1.26□□□□□ -2.21
NUP54-215ENST00000514313 NRXN2Q9P2S2 1712 aa1.26□□□□□ -2.21
NUP54-215ENST00000514313 CLPSL1A2RUU4 121 aa1.25□□□□□ -2.21
NUP54-215ENST00000514313 C1orf54Q8WWF1 131 aa1.25□□□□□ -2.21
NUP54-215ENST00000514313 COPS9Q8WXC6 57 aa1.25□□□□□ -2.21
NUP54-215ENST00000514313 SNRNP25Q9BV90 132 aaKnown RBP1.25□□□□□ -2.21
NUP54-215ENST00000514313 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
NUP54-215ENST00000514313 LSM10Q969L4 123 aaKnown RBP1.24□□□□□ -2.21
NUP54-215ENST00000514313 ZNF518AQ6AHZ1 1483 aa1.24□□□□□ -2.21
NUP54-215ENST00000514313 EDDM3BP56851 147 aa1.23□□□□□ -2.21
NUP54-215ENST00000514313 RERGLQ9H628 205 aa1.23□□□□□ -2.21
NUP54-215ENST00000514313 PLAC8Q9NZF1 115 aa1.23□□□□□ -2.21
NUP54-215ENST00000514313 GVQW2A0A096LPI5 108 aaPredicted RBP1.22□□□□□ -2.21
NUP54-215ENST00000514313 EFCAB10A6NFE3 127 aa1.22□□□□□ -2.21
NUP54-215ENST00000514313 RPL13AP3Q6NVV1 102 aa1.22□□□□□ -2.21
NUP54-215ENST00000514313 PHLPP1O60346 1717 aa1.22□□□□□ -2.21
NUP54-215ENST00000514313 SPEF2Q9C093 1822 aa1.22□□□□□ -2.21
NUP54-215ENST00000514313 LOC100130705A0A1B0GUX0 176 aa1.21□□□□□ -2.22
NUP54-215ENST00000514313 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.21□□□□□ -2.22
NUP54-215ENST00000514313 ZNF818PQ6ZRF7 136 aa1.21□□□□□ -2.22
NUP54-215ENST00000514313 BPESC1Q9GZL8 116 aa1.21□□□□□ -2.22
NUP54-215ENST00000514313 FOCADQ5VW36 1801 aa1.2□□□□□ -2.22
NUP54-215ENST00000514313 TRBV10-3A0A0K0K1G6 114 aa1.2□□□□□ -2.22
NUP54-215ENST00000514313 APODP05090 189 aa1.2□□□□□ -2.22
NUP54-215ENST00000514313 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.2□□□□□ -2.22
NUP54-215ENST00000514313 SERP1Q9Y6X1 66 aa1.2□□□□□ -2.22
NUP54-215ENST00000514313 CCL8P80075 99 aa1.19□□□□□ -2.22
NUP54-215ENST00000514313 LINC00312Q9Y6C7 94 aa1.19□□□□□ -2.22
NUP54-215ENST00000514313 CFTRP13569 1480 aa1.18□□□□□ -2.22
NUP54-215ENST00000514313 TRGV1A0A0A0MS02 117 aa1.18□□□□□ -2.22
NUP54-215ENST00000514313 PRH1P02810 166 aa1.18□□□□□ -2.22
NUP54-215ENST00000514313 RBM3P98179 157 aaKnown RBP1.18□□□□□ -2.22
NUP54-215ENST00000514313 SMIM11BQ8TCY0 68 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms