RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 SMIM7Q9BQ49 75 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 PRADC1Q9BSG0 188 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 SHANK2-AS3Q9BTD1 123 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 OR2H1Q9GZK4 316 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 SCN8AQ9UQD0 1980 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 CFAP47Q6ZTR5 3102 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 HELZ2Q9BYK8 2649 aaKnown RBP2.83□□□□□ -1.96
SF3B1-212ENST00000496458 CENPEQ02224 2701 aa2.83□□□□□ -1.96
SF3B1-212ENST00000496458 IZUMO1RA6ND01 250 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 RIIAD1A6NNX1 92 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 GGTLC3B5MD39 225 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 PIN1P1O15428 100 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 SNRNP200O75643 2136 aaKnown RBP2.82□□□□□ -1.96
SF3B1-212ENST00000496458 PIRTP0C851 137 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 COX8AP10176 69 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 UBE2G1P62253 170 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 SP6Q3SY56 376 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 BPIFA4PQ86YQ2 179 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 MORN4Q8NDC4 146 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 NUP35Q8NFH5 326 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 TMEM191AQ9H0A3 160 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 ZNF355PQ9NSJ1 428 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 ZNRD1Q9P1U0 126 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 COL6A6A6NMZ7 2263 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 BOD1L1Q8NFC6 3051 aa2.82□□□□□ -1.96
SF3B1-212ENST00000496458 PTPRBP23467 1997 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 EML6Q6ZMW3 1958 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 FLNCQ14315 2725 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 ATMQ13315 3056 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 TRBV20OR9-2A0A075B6H5 130 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 TMEM223A0PJW6 202 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 C10orf142B7Z368 130 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 J3QLW9 94 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 NPFFO15130 113 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 KLF7O75840 302 aaPredicted RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 SLC25A5P05141 298 aaKnown RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 SMIM13P0DJ93 91 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 LINC00694P0DN24 101 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 SYCNQ0VAF6 134 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 HES1Q14469 280 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 FAM104BQ5XKR9 115 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 NOXRED1Q6NXP6 359 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 AMTNQ6UX39 209 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 C2orf91Q6ZV80 131 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 ATOH7Q8N100 152 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 ZFP62Q8NB50 900 aaPredicted RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 DEFB124Q8NES8 71 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 CIRBP-AS1Q8TBR5 109 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 PPDPFLQ8WWR9 84 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 ITLN2Q8WWU7 325 aaPredicted RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 AMELYQ99218 206 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 C11orf68Q9H3H3 251 aaKnown RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 BCL2L10Q9HD36 194 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 C21orf62Q9NYP8 219 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 GNG13Q9P2W3 67 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 MPC1Q9Y5U8 109 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 NCKAP5O14513 1909 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 NINQ8N4C6 2090 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 HEATR5BQ9P2D3 2071 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 PLXNB1O43157 2135 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 FLNBO75369 2602 aaKnown RBP2.81□□□□□ -1.96
SF3B1-212ENST00000496458 WDFY3Q8IZQ1 3526 aa2.81□□□□□ -1.96
SF3B1-212ENST00000496458 KMT2BQ9UMN6 2715 aaPredicted RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 LRRK2Q5S007 2527 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 MDC1Q14676 2089 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 HEATR5AQ86XA9 2040 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 TNRC6AQ8NDV7 1962 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 SPTY2D1-AS1A0A0U1RR47 76 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 GRIFINA4D1Z8 144 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 C2orf70A6NJV1 201 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 CPSF4O95639 269 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 IGHV3-7P01780 117 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 RNASE2P10153 161 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 OPRK1P41145 380 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 SUPT4H1P63272 117 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 SERF2P84101 59 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 BSPH1Q075Z2 132 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 DIAPH2-AS1Q14236 149 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 WFDC2Q14508 124 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 ETDBQ3ZM63 59 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 PRR9Q5T870 116 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 RASL11AQ6T310 242 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 TMEM136Q6ZRR5 245 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 WDR86Q86TI4 376 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 GPHB5Q86YW7 130 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 LMX1AQ8TE12 382 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 TSKUQ8WUA8 353 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 ADAT3Q96EY9 351 aaPredicted RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 PRELID3AQ96N28 172 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 C20orf78Q9BR46 151 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 TXNDC17Q9BRA2 123 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 PLA2G12AQ9BZM1 189 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 NAA60Q9H7X0 242 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 FAM60AQ9NP50 221 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 RPUSD1Q9UJJ7 312 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 KLK5Q9Y337 293 aaPredicted RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 SPTBN1Q01082 2364 aaKnown RBP2.8□□□□□ -1.96
SF3B1-212ENST00000496458 ZFHX4Q86UP3 3567 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 LOC400499M0QZD8 3231 aa2.8□□□□□ -1.96
SF3B1-212ENST00000496458 COL27A1Q8IZC6 1860 aaPredicted RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms