RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	ZFP2	Q6ZN57	461 aa		10.24	□□□□□ -0.77
BRCA1-223	ENST00000494123	FAM210B	Q96KR6	192 aa		10.24	□□□□□ -0.77
BRCA1-223	ENST00000494123	CNFN	Q9BYD5	112 aa		10.24	□□□□□ -0.77
BRCA1-223	ENST00000494123	HHLA3	Q9XRX5	114 aa		10.24	□□□□□ -0.77
BRCA1-223	ENST00000494123	TRAV26-1	A0A087WT03	109 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123		A0A0J9YY99	117 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123	TRGC1	P0CF51	173 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123	NUP35	Q8NFH5	326 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123	SAMD10	Q9BYL1	202 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123	MSRB1	Q9NZV6	116 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123	PRO0255	Q9UI72	69 aa		10.23	□□□□□ -0.77
BRCA1-223	ENST00000494123		A0A1B0GUT8	65 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	C14orf178	Q8N769	122 aa	Predicted RBP	10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	PAX4	O43316	350 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	CRYGD	P07320	174 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	SMIM15	Q7Z3B0	74 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	SVBP	Q8N300	66 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	CLRN3	Q8NCR9	226 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	CTDSP1	Q9GZU7	261 aa		10.22	□□□□□ -0.77
BRCA1-223	ENST00000494123	GATA1	P15976	413 aa	Predicted RBP	10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	CRYBA4	P53673	196 aa		10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	TCTA	P57738	103 aa		10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	RIG	Q13278	110 aa		10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	RHEB	Q15382	184 aa		10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	ZNF56	Q15929	161 aa		10.21	□□□□□ -0.78
BRCA1-223	ENST00000494123	C7orf77	A4D0Y5	90 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123		F5H697	171 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123	SNAPIN	O95295	136 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123	UFSP1	Q6NVU6	142 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123	C15orf53	Q8NAA6	179 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123	RPS10P5	Q9NQ39	176 aa		10.2	□□□□□ -0.78
BRCA1-223	ENST00000494123	CSMD3	Q7Z407	3707 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	TRBV6-4	A0A1B0GX49	114 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123		H3BNG1	76 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	NUDT3	O95989	172 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	MGP	P08493	103 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	EVI2A	P22794	236 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	RHOH	Q15669	191 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	VSIG2	Q96IQ7	327 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	PRADC1	Q9BSG0	188 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	DPH3P1	Q9H4G8	78 aa		10.19	□□□□□ -0.78
BRCA1-223	ENST00000494123	FAM3B	P58499	235 aa	Predicted RBP	10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	KCNIP4	Q6PIL6	250 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	SLC25A29	Q8N8R3	303 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	APLN	Q9ULZ1	77 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123		A0A087WWC5	75 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123		K7EQD1	137 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	GYPE	P15421	78 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	RAB4B	P61018	213 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123		Q6ZSN1	163 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	ICOS	Q9Y6W8	199 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	KIF25-AS1	Q9Y6Z4	181 aa		10.18	□□□□□ -0.78
BRCA1-223	ENST00000494123	TENM2	Q9NT68	2774 aa		10.17	□□□□□ -0.78
BRCA1-223	ENST00000494123	MRPL54	Q6P161	138 aa	Known RBP	10.17	□□□□□ -0.78
BRCA1-223	ENST00000494123	IMMP2L	Q96T52	175 aa		10.17	□□□□□ -0.78
BRCA1-223	ENST00000494123	TMEM242	Q9NWH2	141 aa		10.17	□□□□□ -0.78
BRCA1-223	ENST00000494123		A0A1B0GW15	77 aa		10.16	□□□□□ -0.78
BRCA1-223	ENST00000494123	S100A8	P05109	93 aa		10.16	□□□□□ -0.78
BRCA1-223	ENST00000494123	S100P	P25815	95 aa		10.16	□□□□□ -0.78
BRCA1-223	ENST00000494123	CAMP	P49913	170 aa		10.16	□□□□□ -0.78
BRCA1-223	ENST00000494123	STARD9	Q9P2P6	4700 aa		10.16	□□□□□ -0.78
BRCA1-223	ENST00000494123	SRI	P30626	198 aa		10.15	□□□□□ -0.78
BRCA1-223	ENST00000494123	HBB	P68871	147 aa		10.15	□□□□□ -0.78
BRCA1-223	ENST00000494123	MRPL23	Q16540	153 aa	Known RBP	10.15	□□□□□ -0.78
BRCA1-223	ENST00000494123	ATP5L2	Q7Z4Y8	100 aa		10.15	□□□□□ -0.78
BRCA1-223	ENST00000494123	TMEM191A	Q9H0A3	160 aa		10.15	□□□□□ -0.78
BRCA1-223	ENST00000494123	LOC100131303	A0A0U1RQF7	123 aa		10.15	□□□□□ -0.79
BRCA1-223	ENST00000494123	LINC00315	P59091	139 aa		10.15	□□□□□ -0.79
BRCA1-223	ENST00000494123	BTF3L4	Q96K17	158 aa		10.15	□□□□□ -0.79
BRCA1-223	ENST00000494123		A0A096LPF7	62 aa		10.14	□□□□□ -0.79
BRCA1-223	ENST00000494123		H7C1H1	209 aa		10.14	□□□□□ -0.79
BRCA1-223	ENST00000494123	SUMO4	Q6EEV6	95 aa		10.14	□□□□□ -0.79
BRCA1-223	ENST00000494123	URGCP-MRPS24	S4R325	110 aa		10.14	□□□□□ -0.79
BRCA1-223	ENST00000494123	TRAV9-1	A0A075B6T8	112 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	TRBV10-1	A0A0K0K1A3	114 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123		A0A1B0GXF2	115 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	GAGE12J	A6NER3	117 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123		P0DMU3	169 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	FAM231A	P0DMU4	169 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	FAM231C	P0DMU5	169 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	GAGE1	Q13065	139 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	GAGE4	Q13068	117 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	GAGE5	Q13069	117 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	GAGE13	Q4V321	117 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	SH2D6	Q7Z4S9	175 aa		10.12	□□□□□ -0.79
BRCA1-223	ENST00000494123	RPL36A	P83881	106 aa	Known RBP	10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	NEGR1	Q7Z3B1	354 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	UBE2DNL	Q8IWF7	75 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	AMN1	Q8IY45	258 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	RPL36AL	Q969Q0	106 aa	Known RBP	10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	TRAV26-2	A0A0B4J265	109 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123		M0QY20	66 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	CCL18	P55774	89 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	RASL11A	Q6T310	242 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	ZNRF2	Q8NHG8	242 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123		Q9UF83	564 aa		10.11	□□□□□ -0.79
BRCA1-223	ENST00000494123	TRBV7-3	A0A075B6L6	115 aa		10.1	□□□□□ -0.79
BRCA1-223	ENST00000494123	RAB4A	P20338	218 aa		10.1	□□□□□ -0.79
BRCA1-223	ENST00000494123	NEXN-AS1	Q8NBZ9	246 aa		10.1	□□□□□ -0.79
BRCA1-223	ENST00000494123	TNFRSF18	Q9Y5U5	241 aa		10.1	□□□□□ -0.79

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