RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 SOCS3O14543 225 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 ANKRD39Q53RE8 183 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 OXLD1Q5BKU9 147 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 CITED1Q99966 193 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 C11orf21Q9P2W6 132 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 NCOR2Q9Y618 2525 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 H3BMM0 161 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 SPRY2O43597 315 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 IGHV3-53P01767 116 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 DEFB125Q8N687 156 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 PHLDA1Q8WV24 401 aaPredicted RBP5.51□□□□□ -1.53
NPHP3-208ENST00000490993 CHCHD5Q9BSY4 110 aa5.51□□□□□ -1.53
NPHP3-208ENST00000490993 APOC4P55056 127 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 C10orf99Q6UWK7 81 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 CEND1Q8N111 149 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 MDFICQ9P1T7 246 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 PIEZO1Q92508 2521 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 CDH23Q9H251 3354 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 H7C2G1 150 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 RNASE1P07998 156 aaKnown RBP5.5□□□□□ -1.53
NPHP3-208ENST00000490993 LAMA2P24043 3122 aaKnown RBP5.5□□□□□ -1.53
NPHP3-208ENST00000490993 C9orf66Q5T8R8 295 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 ZNRF2Q8NHG8 242 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 ARHGAP32A7KAX9 2087 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 PRR9Q5T870 116 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 DEFB104AQ8WTQ1 72 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 BAALCQ8WXS3 180 aa5.5□□□□□ -1.53
NPHP3-208ENST00000490993 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.5□□□□□ -1.532e-6■□□□□ 8.2
NPHP3-208ENST00000490993 TRBV25-1A0A075B6N4 114 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 IGKV3OR2-268A0A0C4DH90 116 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 PLA2G2AP14555 144 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 ZNF124Q15973 351 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 NDUFA11Q86Y39 141 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 PCP2Q8IVA1 136 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 NRACQ8N912 160 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 URB1-AS1Q96HZ7 61 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 CEP295Q9C0D2 2601 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 RNASE3P12724 160 aaKnown RBP5.49□□□□□ -1.53
NPHP3-208ENST00000490993 INSL3P51460 131 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 TMEM243Q9BU79 118 aa5.49□□□□□ -1.53
NPHP3-208ENST00000490993 IGHV3-64A0A075B6Q5 118 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE12JA6NER3 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 LEPROTO15243 131 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 KRTAP10-9P60411 292 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE4Q13068 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE5Q13069 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 DAZ2Q13117 558 aaKnown RBP5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE13Q4V321 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 ADAMTSL5Q6ZMM2 481 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 DAZ4Q86SG3 579 aaKnown RBP5.48□□□□□ -1.53
NPHP3-208ENST00000490993 DAZ3Q9NR90 486 aaKnown RBP5.48□□□□□ -1.53
NPHP3-208ENST00000490993 ERG28Q9UKR5 140 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 TRBV6-5A0A0K0K1A5 114 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE12BA1L429 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 J3QQQ9 107 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE7O76087 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE12FP0CL80 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE12GP0CL81 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 GAGE12IP0CL82 117 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 PIK3CD-AS1Q5SR53 167 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 Q8N976 141 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 CST9LQ9H4G1 147 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 HERVK_113P63121 156 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 C9orf85Q96MD7 179 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 E9PLD3 99 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 K7EQD1 137 aa5.48□□□□□ -1.53
NPHP3-208ENST00000490993 TMEM263Q8WUH6 116 aaKnown RBP5.48□□□□□ -1.53
NPHP3-208ENST00000490993 ANKRD11Q6UB99 2663 aaPredicted RBP5.47□□□□□ -1.53
NPHP3-208ENST00000490993 C11orf86A6NJI1 115 aa5.47□□□□□ -1.53
NPHP3-208ENST00000490993 Q8N2B8 174 aa5.47□□□□□ -1.53
NPHP3-208ENST00000490993 BBC3Q96PG8 261 aaPredicted RBP5.47□□□□□ -1.53
NPHP3-208ENST00000490993 NOP10Q9NPE3 64 aaKnown RBP5.47□□□□□ -1.53
NPHP3-208ENST00000490993 C20orf203Q8NBC4 194 aa5.47□□□□□ -1.53
NPHP3-208ENST00000490993 A0A1B0GWB2 263 aa5.47□□□□□ -1.53
NPHP3-208ENST00000490993 JPT2Q9H910 190 aa5.47□□□□□ -1.53
NPHP3-208ENST00000490993 TRBV10-1A0A0K0K1A3 114 aa5.46□□□□□ -1.53
NPHP3-208ENST00000490993 DEFB130BP0DP73 79 aa5.46□□□□□ -1.53
NPHP3-208ENST00000490993 DEFB130AP0DP74 79 aa5.46□□□□□ -1.53
NPHP3-208ENST00000490993 NEXN-AS1Q8NBZ9 246 aa5.46□□□□□ -1.53
NPHP3-208ENST00000490993 FAM208BQ5VWN6 2430 aa5.46□□□□□ -1.53
NPHP3-208ENST00000490993 K7EP34 96 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 CRYBA4P53673 196 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 TOMM7Q9P0U1 55 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 ATRXP46100 2492 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 IGHV3-38A0A0C4DH36 116 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 HILS1P60008 231 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 PGPEP1Q9NXJ5 209 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 ACACBO00763 2458 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 TRAV13-1A0A0B4J241 112 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 TRAV4A0A0B4J268 109 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 TRBV27A0A0K0K1C4 114 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 A0A1W2PPM0 123 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 M0QY20 66 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 NDUFA7O95182 113 aa5.46□□□□□ -1.54
NPHP3-208ENST00000490993 Q71RC1 249 aaPredicted RBP5.46□□□□□ -1.54
NPHP3-208ENST00000490993 TRBV7-3A0A075B6L6 115 aa5.45□□□□□ -1.54
NPHP3-208ENST00000490993 NXPH4O95158 308 aa5.45□□□□□ -1.54
NPHP3-208ENST00000490993 SS18Q15532 418 aa5.45□□□□□ -1.54
NPHP3-208ENST00000490993 RIPPLY3P57055 190 aa5.45□□□□□ -1.54
NPHP3-208ENST00000490993 C16orf95Q9H693 158 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms