RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	PHLDA3	Q9Y5J5	127 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	IGKV3D-20	A0A0C4DH25	116 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	IGHV3-16	A0A0C4DH30	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	GAGE12B	A1L429	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	TMEM218	A2RU14	115 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520		A8MWL6	223 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520		C9JQL5	133 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520		M0R2P5	195 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	GAGE7	O76087	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	GAGE12F	P0CL80	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	GAGE12G	P0CL81	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	GAGE12I	P0CL82	117 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	TCL1A	P56279	114 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	NDUFA5	Q16718	116 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	C12orf74	Q32Q52	190 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	LGALS9B	Q3B8N2	356 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	LINC01551	Q86U37	167 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	BORCS7	Q96B45	105 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	NDUFAF3	Q9BU61	184 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	TPPP3	Q9BW30	176 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	DKK2	Q9UBU2	259 aa		6.17	□□□□□ -1.42
USP4-213	ENST00000488520	TRBV20OR9-2	A0A075B6H5	130 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520		A0A1W2PPQ1	181 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	ATP5G1	P05496	136 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	ARMS2	P0C7Q2	107 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	HTN3	P15516	51 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	RPL23	P62829	140 aa	Known RBP	6.16	□□□□□ -1.42
USP4-213	ENST00000488520	PNRC1	Q12796	327 aa	Predicted RBP	6.16	□□□□□ -1.42
USP4-213	ENST00000488520	ZNF876P	Q49A33	203 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	SPANXN1	Q5VSR9	72 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	FAM231D	Q6ZW35	169 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	UBE2DNL	Q8IWF7	75 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	OR10G8	Q8NGN5	311 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	RNASE7	Q9H1E1	156 aa	Known RBP	6.16	□□□□□ -1.42
USP4-213	ENST00000488520	RPP21	Q9H633	154 aa	Known RBP	6.16	□□□□□ -1.42
USP4-213	ENST00000488520	OSTC	Q9NRP0	149 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	IL36B	Q9NZH7	164 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	C11orf21	Q9P2W6	132 aa		6.16	□□□□□ -1.42
USP4-213	ENST00000488520	C19orf71	A6NCJ1	209 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520		F2Z2F3	143 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520		K7EN84	100 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	PPP1R2P9	O14990	202 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	SPINK4	O60575	86 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	MT-ND4L	P03901	98 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	CXCL1	P09341	107 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	SST	P61278	116 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	RPL19	P84098	196 aa	Known RBP	6.15	□□□□□ -1.42
USP4-213	ENST00000488520	DNLZ	Q5SXM8	178 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	SMIM15	Q7Z3B0	74 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	FER1L6-AS1	Q8NA97	138 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	C11orf72	Q8NBR9	251 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	OR4C5	Q8NGB2	326 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	SFRP2	Q96HF1	295 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520	SEC11C	Q9BY50	192 aa		6.15	□□□□□ -1.42
USP4-213	ENST00000488520		F5H768	121 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520		H3BVH4	76 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520		M0R381	172 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	CIDEA	O60543	219 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	SMIM17	P0DL12	118 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	CACNG7	P62955	275 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	SLA	Q13239	276 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520		Q6ZTI0	123 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	ZFP82	Q8N141	532 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	RASL10A	Q92737	203 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	ISOC2	Q96AB3	205 aa		6.14	□□□□□ -1.43
USP4-213	ENST00000488520	MRPL16	Q9NX20	251 aa	Known RBP	6.14	□□□□□ -1.43
USP4-213	ENST00000488520	TMA7	Q9Y2S6	64 aa	Known RBP	6.14	□□□□□ -1.43
USP4-213	ENST00000488520	TRGV4	A0A0C4DH28	118 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	PLAC8L1	A1L4L8	177 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520		A8MWV9	139 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	GZMB	P10144	247 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520		Q6ZR54	194 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	MAPKAPK5-AS1	Q8N8E1	139 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	PTH2	Q96A98	100 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	C9orf85	Q96MD7	179 aa		6.13	□□□□□ -1.43
USP4-213	ENST00000488520	FAM231B	A6NCW3	169 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	C16orf90	A8MZG2	172 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	IGHV3-53	P01767	116 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	OR5AL1	P0C617	328 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	RNASE3	P12724	160 aa	Known RBP	6.12	□□□□□ -1.43
USP4-213	ENST00000488520	GYPE	P15421	78 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	TWIST1	Q15672	202 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	CT83	Q5H943	113 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	PIK3CD-AS1	Q5SR53	167 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	C1orf134	Q5TEV5	83 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	WDR73	Q6P4I2	378 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	LYZL1	Q6UWQ5	148 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	TSKU	Q8WUA8	353 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	GFRA4	Q9GZZ7	299 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	HHLA3	Q9XRX5	114 aa		6.12	□□□□□ -1.43
USP4-213	ENST00000488520	TRAV4	A0A0B4J268	109 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	MUC21	A0A0G2JKD1	596 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	MUC21	A0A140T8X8	626 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	APOC3	P02656	99 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	TRGC1	P0CF51	173 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	SLC7A5P1	Q8MH63	180 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	CLRN3	Q8NCR9	226 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	FAM210B	Q96KR6	192 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	PGLYRP4	Q96LB8	373 aa		6.11	□□□□□ -1.43
USP4-213	ENST00000488520	C18orf15	Q96N68	181 aa		6.11	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms