RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 CFAP126Q5VTH2 177 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 FAM104BQ5XKR9 115 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 UFSP1Q6NVU6 142 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 OR4C5Q8NGB2 326 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 C11orf45Q8TAV5 145 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 LAMTOR2Q9Y2Q5 125 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 KIF25-AS1Q9Y6Z4 181 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 URGCP-MRPS24S4R325 110 aa5.88□□□□□ -1.47
SYNE1-225ENST00000481502 NBEAL2Q6ZNJ1 2754 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 TRBV6-4A0A1B0GX49 114 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 COLCA2A8K830 154 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 H3BNG1 76 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 PHOX2AO14813 284 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 PRM2P04554 102 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 EVI2AP22794 236 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 MRPL54Q6P161 138 aaKnown RBP5.87□□□□□ -1.47
SYNE1-225ENST00000481502 TMEM88Q6PEY1 159 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 Q6ZTI0 123 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 CBLN2Q8IUK8 224 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 MRAP2Q96G30 205 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 U3KQK5 164 aa5.87□□□□□ -1.47
SYNE1-225ENST00000481502 A0A0J9YWU9 116 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 TRBV10-1A0A0K0K1A3 114 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 GAGE12BA1L429 117 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 GAGE7O76087 117 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 IGHV3-53P01767 116 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 GAGE12FP0CL80 117 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 GAGE12GP0CL81 117 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 GAGE12IP0CL82 117 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 RAB4AP20338 218 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 CAMPP49913 170 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 EMP1P54849 157 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 LINC00315P59091 139 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 TMEM136Q6ZRR5 245 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 DNAJC30Q96LL9 226 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 RETNQ9HD89 108 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 MRPL16Q9NX20 251 aaKnown RBP5.86□□□□□ -1.47
SYNE1-225ENST00000481502 MSRB1Q9NZV6 116 aa5.86□□□□□ -1.47
SYNE1-225ENST00000481502 TGIF2-C20orf24A0A0A6YYL0 155 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 DEFB130BP0DP73 79 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 DEFB130AP0DP74 79 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 RAB5AP20339 215 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 C12orf74Q32Q52 190 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 SH2D6Q7Z4S9 175 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 C14orf178Q8N769 122 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-225ENST00000481502 PRO0255Q9UI72 69 aa5.85□□□□□ -1.47
SYNE1-225ENST00000481502 MEGF8Q7Z7M0 2845 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 TRAV10A0A0B4J240 114 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 TRGV4A0A0C4DH28 118 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 MUC21A0A0G2JKD1 596 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 TRBV6-5A0A0K0K1A5 114 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 MUC21A0A140T8X8 626 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 PRSS47A8MTI9 375 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 APCSP02743 223 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 GATA1P15976 413 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-225ENST00000481502 TCTAP57738 103 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 RPL32P62910 135 aaKnown RBP5.84□□□□□ -1.47
SYNE1-225ENST00000481502 FHL2Q14192 279 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 RHOHQ15669 191 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 ORMDL3Q8N138 153 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 RNF185Q96GF1 192 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 ZNF479Q96JC4 524 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 C20orf78Q9BR46 151 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 PRADC1Q9BSG0 188 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 TRAPPC1Q9Y5R8 145 aa5.84□□□□□ -1.47
SYNE1-225ENST00000481502 F5H697 171 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 K7EMI3 77 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 M0QY20 66 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 DEFB4AO15263 64 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 TCAPO15273 167 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 SCO1O75880 301 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 CKS2P33552 79 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 RPS10P46783 165 aaKnown RBP5.83□□□□□ -1.48
SYNE1-225ENST00000481502 FAM74A4Q5TZK3 123 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 AMN1Q8IY45 258 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-225ENST00000481502 SAMD10Q9BYL1 202 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 MRPL18Q9H0U6 180 aaKnown RBP5.83□□□□□ -1.48
SYNE1-225ENST00000481502 JPT2Q9H910 190 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 NIT2Q9NQR4 276 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 CELA1Q9UNI1 258 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 HHLA3Q9XRX5 114 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 STAB2Q8WWQ8 2551 aa5.83□□□□□ -1.48
SYNE1-225ENST00000481502 FBN3Q75N90 2809 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 TRAV26-1A0A087WT03 109 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 A0A087WWL8 130 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 K7EQD1 137 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 CRYBA4P53673 196 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 FABP9Q0Z7S8 132 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 ZNF56Q15929 161 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 MRPL51Q4U2R6 128 aaKnown RBP5.82□□□□□ -1.48
SYNE1-225ENST00000481502 TMEM97Q5BJF2 176 aa5.82□□□□□ -1.48
SYNE1-225ENST00000481502 TENM3Q9P273 2699 aa5.81□□□□□ -1.48
SYNE1-225ENST00000481502 TRBV7-3A0A075B6L6 115 aa5.81□□□□□ -1.48
SYNE1-225ENST00000481502 DEFB131BA0A096LNP1 70 aa5.81□□□□□ -1.48
SYNE1-225ENST00000481502 MGPP08493 103 aa5.81□□□□□ -1.48
SYNE1-225ENST00000481502 SSTP61278 116 aa5.81□□□□□ -1.48
SYNE1-225ENST00000481502 RPL36AP83881 106 aaKnown RBP5.81□□□□□ -1.48
SYNE1-225ENST00000481502 MRPL23Q16540 153 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms