RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 FAT1Q14517 4588 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 GAGE12JA6NER3 117 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 HMSDA8MTL9 139 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 M0R036 132 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 FUSP35637 526 aaKnown RBP eCLIP8.09□□□□□ -1.114e-7■■■□□ 15.3
SQSTM1-207ENST00000481335 GAGE1Q13065 139 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 GAGE4Q13068 117 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 GAGE5Q13069 117 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 GAGE13Q4V321 117 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 Q5VSD8 79 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 CST9LP1Q5W188 147 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 KCNRGQ8N5I3 272 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 RMI2Q96E14 147 aa8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 DMBT1Q9UGM3 2413 aaPredicted RBP8.09□□□□□ -1.11
SQSTM1-207ENST00000481335 EIF5AP63241 154 aaKnown RBP8.08□□□□□ -1.12
SQSTM1-207ENST00000481335 C14orf178Q8N769 122 aaPredicted RBP8.08□□□□□ -1.12
SQSTM1-207ENST00000481335 MBD3L1Q8WWY6 194 aa8.08□□□□□ -1.12
SQSTM1-207ENST00000481335 SAMD10Q9BYL1 202 aa8.08□□□□□ -1.12
SQSTM1-207ENST00000481335 URGCP-MRPS24S4R325 110 aa8.08□□□□□ -1.12
SQSTM1-207ENST00000481335 A0A0D9SG52 128 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 PFDN1O60925 122 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 RPL36AP83881 106 aaKnown RBP8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 ELOBQ15370 118 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 FAM74A4Q5TZK3 123 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 RPL36ALQ969Q0 106 aaKnown RBP8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 JPT2Q9H910 190 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 VPS13BQ7Z7G8 4022 aa8.07□□□□□ -1.12
SQSTM1-207ENST00000481335 TRBV7-3A0A075B6L6 115 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 KANTRA0A1W2PQU2 76 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 GRIFINA4D1Z8 144 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 FAM229AH3BQW9 127 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 M0R381 172 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 PAGE4O60829 102 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 INAFM2P0DMQ5 153 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 NIT1Q86X76 327 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 OR10G8Q8NGN5 311 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 SFT2D1Q8WV19 159 aa8.06□□□□□ -1.12
SQSTM1-207ENST00000481335 BCL2L11O43521 198 aa8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 RAB4BP61018 213 aa8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 KCNIP4Q6PIL6 250 aa8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 DAZ4Q86SG3 579 aaKnown RBP8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 FAM213BQ8TBF2 198 aa8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 MLST8Q9BVC4 326 aa8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 DAZ3Q9NR90 486 aaKnown RBP8.05□□□□□ -1.12
SQSTM1-207ENST00000481335 SRRM2Q9UQ35 2752 aaKnown RBP8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 A0A087WWL8 130 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 SNAI2O43623 268 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 OR5AL1P0C617 328 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 UBE2D3P61077 147 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 PKIAP61925 76 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 UBE2D2P62837 147 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 Q0VG73 95 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 SSBP4Q9BWG4 385 aaPredicted RBP8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 ZNF471Q9BX82 626 aaPredicted RBP8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 Q9UF83 564 aa8.04□□□□□ -1.12
SQSTM1-207ENST00000481335 A0A087WX48 190 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 TMSB15BA0A087X1C1 80 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 SCO2A0A1W2PP80 73 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 H2AFB1P0C5Y9 115 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 ATRAIDQ6UW56 229 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 Q6ZSA8 131 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 BAGE2Q86Y30 109 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 Q8N3U1 123 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 MANBALQ9NQG1 85 aa8.03□□□□□ -1.12
SQSTM1-207ENST00000481335 DNAH8Q96JB1 4490 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 SMLR1H3BR10 107 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 RAB5CP51148 216 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 TMEM97Q5BJF2 176 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 PRR27Q6MZM9 219 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 Q8N976 141 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 SMIM12Q96EX1 92 aa8.02□□□□□ -1.13
SQSTM1-207ENST00000481335 MYCBP2O75592 4640 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 TRBV6-8A0A0A6YYG3 113 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 TRAV1-1A0A0B4J248 108 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 TEX46H3BTG2 121 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 WFDC2Q14508 124 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 ZNF56Q15929 161 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 SPANXN1Q5VSR9 72 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 EIF5AL1Q6IS14 154 aaKnown RBP8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 OR10AG1Q8NH19 301 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 C11orf52Q96A22 123 aa8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 FLG2Q5D862 2391 aaPredicted RBP8.01□□□□□ -1.13
SQSTM1-207ENST00000481335 IGKV2D-24A0A075B6R9 120 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 RBFOX3A6NFN3 312 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 SMR3BP02814 79 aaPredicted RBP8□□□□□ -1.13
SQSTM1-207ENST00000481335 C14orf177Q52M58 125 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 TMUB2Q71RG4 321 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 AP1S3Q96PC3 154 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 VAX2Q9UIW0 290 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 KLK12Q9UKR0 248 aa8□□□□□ -1.13
SQSTM1-207ENST00000481335 CRPP02741 224 aa7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 SMIM17P0DL12 118 aa7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 RPL35P42766 123 aaKnown RBP7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 RPL19P84098 196 aaKnown RBP7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 UBE2WQ96B02 151 aa7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 FAM30AQ9NZY2 134 aa7.99□□□□□ -1.13
SQSTM1-207ENST00000481335 HERC1Q15751 4861 aa7.98□□□□□ -1.13
SQSTM1-207ENST00000481335 A0A1B0GV50 99 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms