RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CLPSL2Q6UWE3 100 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 MTCL1Q9Y4B5 1905 aaKnown RBP6.91□□□□□ -1.3
COL6A3-210ENST00000473258 PSCAO43653 123 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV1-46P01743 117 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 CCKP06307 115 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 TRBV6-1A0A0K0K1D8 114 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 SORL1Q92673 2214 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 A0A1B0GUL6 1792 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 UBE2D3P61077 147 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 UBE2D2P62837 147 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 ZNF883P0CG24 379 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 FAM110DQ8TAY7 271 aaPredicted RBP6.9□□□□□ -1.3
COL6A3-210ENST00000473258 NAV3Q8IVL0 2385 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 TOGARAM1Q9Y4F4 1720 aa6.9□□□□□ -1.3
COL6A3-210ENST00000473258 FAM30AQ9NZY2 134 aa6.9□□□□□ -1.31
COL6A3-210ENST00000473258 BEAN1Q3B7T3 259 aa6.9□□□□□ -1.31
COL6A3-210ENST00000473258 TMEM263Q8WUH6 116 aaKnown RBP6.9□□□□□ -1.31
COL6A3-210ENST00000473258 MBD6Q96DN6 1003 aa6.9□□□□□ -1.31
COL6A3-210ENST00000473258 WIPF1O43516 503 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 APOC4P55056 127 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 KDM3BQ7LBC6 1761 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 IGLV2-8P01709 118 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 VMO1Q7Z5L0 202 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 TJP1Q07157 1748 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 A0A0J9YWU9 116 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 PATE2Q6UY27 113 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 FER1L5A0AVI2 2057 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 FAM27E3Q08E93 113 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 LINC00269Q8N2A0 174 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 PLA2G2FQ9BZM2 168 aa6.89□□□□□ -1.31
COL6A3-210ENST00000473258 AHDC1Q5TGY3 1603 aaPredicted RBP6.89□□□□□ -1.31
COL6A3-210ENST00000473258 BSPH1Q075Z2 132 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 SPAG11AQ6PDA7 123 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 C7orf69Q9H7B7 122 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 SCN7AQ01118 1682 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 MED13Q9UHV7 2174 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 MED14OSP0DP75 135 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 ZNF833PQ6ZTB9 187 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 FOXL2NBQ6ZUU3 175 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 Q8N3U1 123 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 MED12LQ86YW9 2145 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 CACNA1HO95180 2353 aa6.88□□□□□ -1.31
COL6A3-210ENST00000473258 IGLV3-9A0A075B6K5 115 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 UBE2D1P51668 147 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 CRIP2P52943 208 aaPredicted RBP6.87□□□□□ -1.31
COL6A3-210ENST00000473258 CAMK2N2Q96S95 79 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 C22orf34Q6ZV56 151 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 SEM1Q6ZVN7 128 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 WFDC13Q8IUB5 93 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 ZDBF2Q9HCK1 2354 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 DDX60LQ5H9U9 1706 aaKnown RBP6.87□□□□□ -1.31
COL6A3-210ENST00000473258 RICTORQ6R327 1708 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 C8orf87E5RJ46 101 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 POM121L12Q8N7R1 296 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 PROK2Q9HC23 129 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 A0A087WZ39 114 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 LINC00208Q96KT6 92 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 EML6Q6ZMW3 1958 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 PIP4P2Q8N4L2 257 aa6.87□□□□□ -1.31
COL6A3-210ENST00000473258 CUL9Q8IWT3 2517 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 SLC22A18ASQ8N1D0 253 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 PRR14LQ5THK1 2151 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 MAST2Q6P0Q8 1798 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 IGHV4-38-2P0DP08 117 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 C11orf1Q9H5F2 150 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 LINC00310P59036 64 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 LINC00336Q6ZUF6 198 aa6.86□□□□□ -1.31
COL6A3-210ENST00000473258 DOCK3Q8IZD9 2030 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 C3orf84H3BNL1 204 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 LINC00311Q8N616 119 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 ZNRD1Q9P1U0 126 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 MYLKQ15746 1914 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 ARHGAP21Q5T5U3 1957 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 PHF3Q92576 2039 aaKnown RBP6.85□□□□□ -1.31
COL6A3-210ENST00000473258 DOCK1Q14185 1865 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 ZNF706Q9Y5V0 76 aaPredicted RBP6.85□□□□□ -1.31
COL6A3-210ENST00000473258 TNCP24821 2201 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 ARFGEF1Q9Y6D6 1849 aa6.85□□□□□ -1.31
COL6A3-210ENST00000473258 A0A0G2JNJ9 132 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 NDUFA1O15239 70 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 RNASE6Q93091 150 aaKnown RBP6.84□□□□□ -1.31
COL6A3-210ENST00000473258 Q9UFV3 132 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 PRM2P04554 102 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 ATAD5Q96QE3 1844 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 C17orf82Q86X59 251 aaPredicted RBP6.84□□□□□ -1.31
COL6A3-210ENST00000473258 ODF3Q96PU9 254 aa6.84□□□□□ -1.31
COL6A3-210ENST00000473258 TNRC6BQ9UPQ9 1833 aaKnown RBP6.84□□□□□ -1.31
COL6A3-210ENST00000473258 CD164L2Q6UWJ8 174 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 LINC00322Q6ZN03 302 aaPredicted RBP6.83□□□□□ -1.32
COL6A3-210ENST00000473258 C15orf65H3BRN8 121 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 RNASE3P12724 160 aaKnown RBP6.83□□□□□ -1.32
COL6A3-210ENST00000473258 PTPRDP23468 1912 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 DOCK4Q8N1I0 1966 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 TPSG1Q9NRR2 321 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 LYNX1G3V0Z9 82 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 ATP6V0E1O15342 81 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 LYNX1P0DP58 116 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 RETNLBQ9BQ08 111 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 TRBV10-3A0A0K0K1G6 114 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 C6orf99Q4VX62 202 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 446.7 ms