RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SAMD5Q5TGI4 173 aa9.29□□□□□ -0.92
VPS13D-205ENST00000473099 HIST3H2BBQ8N257 126 aa9.29□□□□□ -0.92
VPS13D-205ENST00000473099 C14orf178Q8N769 122 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-205ENST00000473099 IL17DQ8TAD2 202 aa9.29□□□□□ -0.92
VPS13D-205ENST00000473099 RHODO00212 210 aa9.28□□□□□ -0.92
VPS13D-205ENST00000473099 IGHV4-30-4P0DP06 118 aa9.28□□□□□ -0.92
VPS13D-205ENST00000473099 TMEM18Q96B42 140 aa9.28□□□□□ -0.92
VPS13D-205ENST00000473099 CHCHD1Q96BP2 118 aaKnown RBP9.28□□□□□ -0.92
VPS13D-205ENST00000473099 MAP1LC3AQ9H492 121 aa9.28□□□□□ -0.92
VPS13D-205ENST00000473099 KIF25-AS1Q9Y6Z4 181 aa9.28□□□□□ -0.92
VPS13D-205ENST00000473099 SERF1AO75920 110 aa9.27□□□□□ -0.93
VPS13D-205ENST00000473099 MGPP08493 103 aa9.27□□□□□ -0.93
VPS13D-205ENST00000473099 AZU1P20160 251 aa9.27□□□□□ -0.93
VPS13D-205ENST00000473099 KRTAP10-11P60412 298 aa9.27□□□□□ -0.93
VPS13D-205ENST00000473099 RASL10AQ92737 203 aa9.27□□□□□ -0.93
VPS13D-205ENST00000473099 PACRGQ96M98 296 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-205ENST00000473099 SPRY2O43597 315 aa9.26□□□□□ -0.93
VPS13D-205ENST00000473099 CIDEAO60543 219 aa9.26□□□□□ -0.93
VPS13D-205ENST00000473099 PMCHP20382 165 aa9.26□□□□□ -0.93
VPS13D-205ENST00000473099 Q6ZWC4 215 aa9.26□□□□□ -0.93
VPS13D-205ENST00000473099 PRSS47A8MTI9 375 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 G3V4G9 280 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 H7C1H1 209 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 HSBP1O75506 76 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 TNFRSF6BO95407 300 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 NCR2O95944 276 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 NPYP01303 97 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 CRYGDP07320 174 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 LINC00614P0C842 121 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 LINC00315P59091 139 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 IQCJQ1A5X6 159 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 NIT1Q86X76 327 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 PRSS3P2Q8NHM4 247 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 C20orf78Q9BR46 151 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 OVOL2Q9BRP0 275 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 EDA2RQ9HAV5 297 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 NXT2Q9NPJ8 142 aaKnown RBP9.25□□□□□ -0.93
VPS13D-205ENST00000473099 MGAM2Q2M2H8 2515 aa9.25□□□□□ -0.93
VPS13D-205ENST00000473099 A0A087WWL8 130 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 F5H697 171 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 SMKR1H3BMG3 65 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 RS1O15537 224 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 ZNF56Q15929 161 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 FAM74A4Q5TZK3 123 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 RNASEKQ6P5S7 137 aaKnown RBP9.24□□□□□ -0.93
VPS13D-205ENST00000473099 ZFP2Q6ZN57 461 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 FA2HQ7L5A8 372 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 NRACQ8N912 160 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 SAMD10Q9BYL1 202 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 JPT2Q9H910 190 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 AP5S1Q9NUS5 200 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 TP53TG1Q9Y2A0 90 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 CMYA5Q8N3K9 4069 aa9.24□□□□□ -0.93
VPS13D-205ENST00000473099 TRGV1A0A0A0MS02 117 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 PRM2P04554 102 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 LINC00310P59036 64 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 DEFB135Q30KP9 77 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 PDZD11Q5EBL8 140 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 RNF183Q96D59 192 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 HIST1H2BLQ99880 126 aa9.23□□□□□ -0.93
VPS13D-205ENST00000473099 MRPL16Q9NX20 251 aaKnown RBP9.23□□□□□ -0.93
VPS13D-205ENST00000473099 TRAV4A0A0B4J268 109 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 PLAC8L1A1L4L8 177 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 K7EMI3 77 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 MIFP14174 115 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 FABP4P15090 132 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 RPL32P62910 135 aaKnown RBP9.22□□□□□ -0.93
VPS13D-205ENST00000473099 KPRPQ5T749 579 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-205ENST00000473099 CFAP126Q5VTH2 177 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 SUMO4Q6EEV6 95 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 NOP10Q9NPE3 64 aaKnown RBP9.22□□□□□ -0.93
VPS13D-205ENST00000473099 X6R8D5 127 aa9.22□□□□□ -0.93
VPS13D-205ENST00000473099 TRAV26-2A0A0B4J265 109 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 TRBV6-5A0A0K0K1A5 114 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 LINC01546A6NGU7 62 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 NUPR1O60356 82 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 IFI27P40305 119 aaPredicted RBP9.21□□□□□ -0.94
VPS13D-205ENST00000473099 AMTP48728 403 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 AKR1D1P51857 326 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 SUMO2P61956 95 aaKnown RBP9.21□□□□□ -0.94
VPS13D-205ENST00000473099 UFSP1Q6NVU6 142 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 Q8N8P6 123 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 OR4C5Q8NGB2 326 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 OR11H2Q8NH07 326 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 SMIM2Q9BVW6 85 aa9.21□□□□□ -0.94
VPS13D-205ENST00000473099 LOC389332A0A1B0GUA5 103 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 IFITM10A6NMD0 228 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 LYRM9A8MSI8 78 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 M0QY20 66 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 GATA1P15976 413 aaPredicted RBP9.2□□□□□ -0.94
VPS13D-205ENST00000473099 Q6ZTI0 123 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 URB1-AS1Q96HZ7 61 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 C18orf15Q96N68 181 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 ST20Q9HBF5 79 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 NIT2Q9NQR4 276 aa9.2□□□□□ -0.94
VPS13D-205ENST00000473099 TEX48A0A1B0GUV7 120 aa9.19□□□□□ -0.94
VPS13D-205ENST00000473099 TCAPO15273 167 aa9.19□□□□□ -0.94
VPS13D-205ENST00000473099 GAS8-AS1O95177 125 aa9.19□□□□□ -0.94
VPS13D-205ENST00000473099 IGHV3-53P01767 116 aa9.19□□□□□ -0.94
VPS13D-205ENST00000473099 DNAJC30Q96LL9 226 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms