RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TRGV4A0A0C4DH28 118 aa10.34□□□□□ -0.75
COL9A3-209ENST00000469852 CACNG7P62955 275 aa10.34□□□□□ -0.75
COL9A3-209ENST00000469852 FAM74A4Q5TZK3 123 aa10.34□□□□□ -0.75
COL9A3-209ENST00000469852 KIF25-AS1Q9Y6Z4 181 aa10.34□□□□□ -0.75
COL9A3-209ENST00000469852 FAM231BA6NCW3 169 aa10.33□□□□□ -0.76
COL9A3-209ENST00000469852 MT-ND4LP03901 98 aa10.33□□□□□ -0.76
COL9A3-209ENST00000469852 GATA1P15976 413 aaPredicted RBP10.33□□□□□ -0.76
COL9A3-209ENST00000469852 CRYBA4P53673 196 aa10.33□□□□□ -0.76
COL9A3-209ENST00000469852 C14orf178Q8N769 122 aaPredicted RBP10.33□□□□□ -0.76
COL9A3-209ENST00000469852 APLNQ9ULZ1 77 aa10.33□□□□□ -0.76
COL9A3-209ENST00000469852 KLK5Q9Y337 293 aaPredicted RBP10.33□□□□□ -0.76
COL9A3-209ENST00000469852 ALMS1Q8TCU4 4167 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 LOC100131303A0A0U1RQF7 123 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 PPP1R2P9O14990 202 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 APOC3P02656 99 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 EVI2AP22794 236 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 LINC00315P59091 139 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 TWIST1Q15672 202 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 WDR73Q6P4I2 378 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 ZFP2Q6ZN57 461 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 CLRN3Q8NCR9 226 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 ANAPC16Q96DE5 110 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 NAT8BQ9UHF3 227 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 HHLA3Q9XRX5 114 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 SACSQ9NZJ4 4579 aa10.32□□□□□ -0.76
COL9A3-209ENST00000469852 EPPK1P58107 5090 aaKnown RBP10.32□□□□□ -0.76
COL9A3-209ENST00000469852 SLC25A29Q8N8R3 303 aa10.31□□□□□ -0.76
COL9A3-209ENST00000469852 AP1S3Q96PC3 154 aa10.31□□□□□ -0.76
COL9A3-209ENST00000469852 Q9UF83 564 aa10.31□□□□□ -0.76
COL9A3-209ENST00000469852 PRO0255Q9UI72 69 aa10.31□□□□□ -0.76
COL9A3-209ENST00000469852 DNAH1Q9P2D7 4330 aa10.31□□□□□ -0.76
COL9A3-209ENST00000469852 A0A1B0GUT8 65 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 C7orf77A4D0Y5 90 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 PAX4O43316 350 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 FAM3BP58499 235 aaPredicted RBP10.3□□□□□ -0.76
COL9A3-209ENST00000469852 NDUFA5Q16718 116 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 FAM210BQ96KR6 192 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 VPS13DQ5THJ4 4388 aa10.3□□□□□ -0.76
COL9A3-209ENST00000469852 RHODO00212 210 aa10.29□□□□□ -0.76
COL9A3-209ENST00000469852 CIDEAO60543 219 aa10.29□□□□□ -0.76
COL9A3-209ENST00000469852 P0DMU3 169 aa10.29□□□□□ -0.76
COL9A3-209ENST00000469852 FAM231AP0DMU4 169 aa10.29□□□□□ -0.76
COL9A3-209ENST00000469852 FAM231CP0DMU5 169 aa10.29□□□□□ -0.76
COL9A3-209ENST00000469852 A0A096LPF7 62 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 NUDT3O95989 172 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 MGPP08493 103 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 TRGC1P0CF51 173 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 ZNF56Q15929 161 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 MRPL54Q6P161 138 aaKnown RBP10.28□□□□□ -0.76
COL9A3-209ENST00000469852 BORCS7Q96B45 105 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 RPS10P5Q9NQ39 176 aa10.28□□□□□ -0.76
COL9A3-209ENST00000469852 TRBV6-4A0A1B0GX49 114 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 H3BNG1 76 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 K7EQD1 137 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 GYPEP15421 78 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 SLAQ13239 276 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 RHEBQ15382 184 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 ATRAIDQ6UW56 229 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 CTDSP1Q9GZU7 261 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 DPH3P1Q9H4G8 78 aa10.27□□□□□ -0.77
COL9A3-209ENST00000469852 A0A087WWC5 75 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 A0A1B0GXF2 115 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 SMIM17P0DL12 118 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 RAB4BP61018 213 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 RIGQ13278 110 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 SVBPQ8N300 66 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 C15orf53Q8NAA6 179 aa10.26□□□□□ -0.77
COL9A3-209ENST00000469852 LCE6AA0A183 80 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 F5H697 171 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 SNAPINO95295 136 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 CAMPP49913 170 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 RHOHQ15669 191 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 SUMO4Q6EEV6 95 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 ICOSQ9Y6W8 199 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 BIRC6Q9NR09 4857 aa10.25□□□□□ -0.77
COL9A3-209ENST00000469852 TRAV26-2A0A0B4J265 109 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 GAGE12JA6NER3 117 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 LINC00694P0DN24 101 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 TCTAP57738 103 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 GAGE1Q13065 139 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 GAGE4Q13068 117 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 GAGE5Q13069 117 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 GAGE13Q4V321 117 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 RNF185Q96GF1 192 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 PRADC1Q9BSG0 188 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 TMEM191AQ9H0A3 160 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 TMEM242Q9NWH2 141 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 URGCP-MRPS24S4R325 110 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 HYDINQ4G0P3 5121 aa10.24□□□□□ -0.77
COL9A3-209ENST00000469852 M0QY20 66 aa10.23□□□□□ -0.77
COL9A3-209ENST00000469852 GAS8-AS1O95177 125 aa10.23□□□□□ -0.77
COL9A3-209ENST00000469852 HBBP68871 147 aa10.23□□□□□ -0.77
COL9A3-209ENST00000469852 AMN1Q8IY45 258 aa10.23□□□□□ -0.77
COL9A3-209ENST00000469852 IMMP2LQ96T52 175 aa10.23□□□□□ -0.77
COL9A3-209ENST00000469852 MRPL23Q16540 153 aaKnown RBP10.22□□□□□ -0.77
COL9A3-209ENST00000469852 SMIM15Q7Z3B0 74 aa10.22□□□□□ -0.77
COL9A3-209ENST00000469852 GATD1Q8NB37 220 aa10.22□□□□□ -0.77
COL9A3-209ENST00000469852 NEXN-AS1Q8NBZ9 246 aa10.22□□□□□ -0.77
COL9A3-209ENST00000469852 RAB4AP20338 218 aa10.21□□□□□ -0.77
COL9A3-209ENST00000469852 SRIP30626 198 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms