RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 A0A0J9YX75 114 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 K7EQG2 157 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 K7ERJ3 54 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 DUSP14O95147 198 aaKnown RBP14.18□□□□□ -0.14
VIM-203ENST00000469543 RPL39P62891 51 aaKnown RBP14.18□□□□□ -0.14
VIM-203ENST00000469543 HSD52Q0P140 79 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 Q5PR19 223 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 HIST2H2BCQ6DN03 193 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 SUMO4Q6EEV6 95 aa14.18□□□□□ -0.14
VIM-203ENST00000469543 SNRPD3P62318 126 aaKnown RBP14.17□□□□□ -0.14
VIM-203ENST00000469543 SEC11AP67812 179 aa14.17□□□□□ -0.14
VIM-203ENST00000469543 TOMM6Q96B49 74 aa14.17□□□□□ -0.14
VIM-203ENST00000469543 C20orf78Q9BR46 151 aa14.17□□□□□ -0.14
VIM-203ENST00000469543 LGALS1P09382 135 aaKnown RBP14.16□□□□□ -0.14
VIM-203ENST00000469543 CHAC1Q9BUX1 264 aa14.16□□□□□ -0.14
VIM-203ENST00000469543 KNCNA6PVL3 124 aa14.16□□□□□ -0.14
VIM-203ENST00000469543 ORMDL2Q53FV1 153 aa14.16□□□□□ -0.14
VIM-203ENST00000469543 TCTEX1D4Q5JR98 221 aa14.16□□□□□ -0.14
VIM-203ENST00000469543 Q96MF0 132 aa14.16□□□□□ -0.14
VIM-203ENST00000469543 SIVA1O15304 175 aa14.15□□□□□ -0.14
VIM-203ENST00000469543 NEXN-AS1Q8NBZ9 246 aa14.15□□□□□ -0.14
VIM-203ENST00000469543 BAALCQ8WXS3 180 aa14.15□□□□□ -0.14
VIM-203ENST00000469543 HELZ2Q9BYK8 2649 aaKnown RBP14.15□□□□□ -0.14
VIM-203ENST00000469543 IGHV3-16A0A0C4DH30 117 aa14.15□□□□□ -0.14
VIM-203ENST00000469543 J3QLI3 93 aa14.15□□□□□ -0.14
VIM-203ENST00000469543 CHTOPQ9Y3Y2 248 aaKnown RBP14.15□□□□□ -0.14
VIM-203ENST00000469543 TRBV7-9A0A0J9YWB2 115 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 RBMY1A1P0DJD3 496 aaKnown RBP14.14□□□□□ -0.15
VIM-203ENST00000469543 RBMY1CP0DJD4 496 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 RBMY1FQ15415 496 aaKnown RBP14.14□□□□□ -0.15
VIM-203ENST00000469543 KHDC1LQ5JSQ8 128 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 ZNF256Q9Y2P7 627 aaPredicted RBP14.14□□□□□ -0.15
VIM-203ENST00000469543 PRSS29PA6NIE9 313 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 CDKN1BP46527 198 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 C11orf44Q8N8P7 122 aa14.14□□□□□ -0.15
VIM-203ENST00000469543 F8VRH5 84 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 H7C1H1 209 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 TSHBP01222 138 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 FSHBP01225 129 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 MED14OSP0DP75 135 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 SETXQ7Z333 2677 aaKnown RBP14.13□□□□□ -0.15
VIM-203ENST00000469543 A6NDN8 102 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 NXPH4O95158 308 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 UBE2E2Q96LR5 201 aa14.13□□□□□ -0.15
VIM-203ENST00000469543 C2CD3Q4AC94 2353 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 IGHV3-73A0A0B4J1V6 119 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 GAGE12BA1L429 117 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 C9orf118A6NHY6 69 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 CRYGDP07320 174 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 DEFB113Q30KQ7 82 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 TP53TG1Q9Y2A0 90 aa14.12□□□□□ -0.15
VIM-203ENST00000469543 NACAE9PAV3 2078 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 SDHAF1A6NFY7 115 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 OR11H1Q8NG94 326 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 OPRPNQ99935 248 aaPredicted RBP14.11□□□□□ -0.15
VIM-203ENST00000469543 GAGE10A6NGK3 116 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 H3BRM9 83 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 ZFP2Q6ZN57 461 aa14.11□□□□□ -0.15
VIM-203ENST00000469543 ELANEP08246 267 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 POLR2KP53803 58 aaKnown RBP14.1□□□□□ -0.15
VIM-203ENST00000469543 MORN3Q6PF18 240 aaPredicted RBP14.1□□□□□ -0.15
VIM-203ENST00000469543 HLA-DRB4P13762 266 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 PLNP26678 52 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 DEFB131AP59861 70 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 ZNF56Q15929 161 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 ZNF876PQ49A33 203 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 AMTNQ6UX39 209 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 HLA-DRB4X5D2U9 266 aa14.1□□□□□ -0.15
VIM-203ENST00000469543 PROK1P58294 105 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 KLHL30-AS1Q8NEE0 82 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 NHP2Q9NX24 153 aaKnown RBP14.09□□□□□ -0.15
VIM-203ENST00000469543 Q9UF83 564 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 IGHV1OR15-1A0A075B7D0 117 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 POM121L12Q8N7R1 296 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 C9orf85Q96MD7 179 aa14.09□□□□□ -0.15
VIM-203ENST00000469543 TRAV12-1A0A0B4J245 112 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 RNF151Q2KHN1 245 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 CD300EQ496F6 205 aaPredicted RBP14.08□□□□□ -0.16
VIM-203ENST00000469543 PDZD2O15018 2839 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 RBX1P62877 108 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 TMEM61Q8N0U2 210 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 CST9LQ9H4G1 147 aa14.08□□□□□ -0.16
VIM-203ENST00000469543 TMEM89A2RUT3 159 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 LGALS9O00182 355 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 P0DMU3 169 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 FAM231AP0DMU4 169 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 FAM231CP0DMU5 169 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 KRTAP1-3Q8IUG1 177 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 WFDC11Q8NEX6 87 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 M0QY20 66 aa14.07□□□□□ -0.16
VIM-203ENST00000469543 IGIPA6NJ69 53 aa14.06□□□□□ -0.16
VIM-203ENST00000469543 DLX4Q92988 240 aaPredicted RBP14.06□□□□□ -0.16
VIM-203ENST00000469543 HIGD1BQ9P298 99 aa14.06□□□□□ -0.16
VIM-203ENST00000469543 NOTCH2Q04721 2471 aa14.06□□□□□ -0.16
VIM-203ENST00000469543 RBMY1BA6NDE4 496 aaKnown RBP14.06□□□□□ -0.16
VIM-203ENST00000469543 RBMY1EA6NEQ0 496 aaKnown RBP14.06□□□□□ -0.16
VIM-203ENST00000469543 RBMY1DP0C7P1 496 aaKnown RBP14.06□□□□□ -0.16
VIM-203ENST00000469543 SMIM13P0DJ93 91 aa14.06□□□□□ -0.16
VIM-203ENST00000469543 CEND1Q8N111 149 aa14.06□□□□□ -0.16
VIM-203ENST00000469543 CYSLTR1Q9Y271 337 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms