RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 H3BRM9 83 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 LGALS9O00182 355 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 GCSHP23434 173 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 PLNP26678 52 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 Q8N1Y9 231 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 CHAC1Q9BUX1 264 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 CHTOPQ9Y3Y2 248 aaKnown RBP6.64□□□□□ -1.35
SYNE1-217ENST00000466159 C9orf118A6NHY6 69 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 H3BUT2 72 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 K7EMI3 77 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 FXYD2P54710 66 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 Q5PR19 223 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 FAM74A4Q5TZK3 123 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 BAALCQ8WXS3 180 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 ODF3Q96PU9 254 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 JMJD8Q96S16 334 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 HIGD1BQ9P298 99 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 TLN2Q9Y4G6 2542 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 NBPF19A0A087WUL8 3843 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 PPP1R17O96001 155 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 SLURP1P55000 103 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 DEFB113Q30KQ7 82 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 C9orf85Q96MD7 179 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 PRRC2AP48634 2157 aaKnown RBP6.63□□□□□ -1.35
SYNE1-217ENST00000466159 DUSP14O95147 198 aaKnown RBP6.63□□□□□ -1.35
SYNE1-217ENST00000466159 HLA-DRB4P13762 266 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 POLR2KP53803 58 aaKnown RBP6.63□□□□□ -1.35
SYNE1-217ENST00000466159 TCTEX1D4Q5JR98 221 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 HIST2H2BDQ6DRA6 164 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 HLA-DRB4X5D2U9 266 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 MYO9AB2RTY4 2548 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 PRSS29PA6NIE9 313 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 Q96MF0 132 aa6.63□□□□□ -1.35
SYNE1-217ENST00000466159 IGHV1OR15-1A0A075B7D0 117 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 ZFP2Q6ZN57 461 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 RNF152Q8N8N0 203 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 DUX3Q96PT4 197 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 EPG5Q9HCE0 2579 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 APCP25054 2843 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 SDHAF1A6NFY7 115 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 GAGE10A6NGK3 116 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 KNCNA6PVL3 124 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 TSHBP01222 138 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 RPL39P62891 51 aaKnown RBP6.62□□□□□ -1.35
SYNE1-217ENST00000466159 AMTNQ6UX39 209 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 TP53TG1Q9Y2A0 90 aa6.62□□□□□ -1.35
SYNE1-217ENST00000466159 CRYGDP07320 174 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 FOXI2Q6ZQN5 318 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 CYSLTR1Q9Y271 337 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 GAGE12BA1L429 117 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 K7ERJ3 54 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 VCYO14598 125 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 SMIM13P0DJ93 91 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 RBMY1A1P0DJD3 496 aaKnown RBP6.61□□□□□ -1.35
SYNE1-217ENST00000466159 RBMY1CP0DJD4 496 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 HTN1P15515 57 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 RPL32P62910 135 aaKnown RBP6.61□□□□□ -1.35
SYNE1-217ENST00000466159 RBMY1FQ15415 496 aaKnown RBP6.61□□□□□ -1.35
SYNE1-217ENST00000466159 ZNF56Q15929 161 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 MORN3Q6PF18 240 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-217ENST00000466159 CEND1Q8N111 149 aa6.61□□□□□ -1.35
SYNE1-217ENST00000466159 ZNF256Q9Y2P7 627 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-217ENST00000466159 SONP18583 2426 aaKnown RBP6.6□□□□□ -1.35
SYNE1-217ENST00000466159 AKAP9Q99996 3911 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 IGIPA6NJ69 53 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 EMP1P54849 157 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 DEFB131AP59861 70 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 UFSP1Q6NVU6 142 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 SYT8Q8NBV8 401 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 OR11H1Q8NG94 326 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 KIR2DL4Q99706 377 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 OR11H12B2RN74 326 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 TMEM238C9JI98 176 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 M0QY20 66 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 PRM2P04554 102 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 ZNF876PQ49A33 203 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 KHDC1LQ5JSQ8 128 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 KRTAP1-3Q8IUG1 177 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 OR11H2Q8NH07 326 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 TM2D2Q9BX73 214 aa6.6□□□□□ -1.35
SYNE1-217ENST00000466159 NHP2Q9NX24 153 aaKnown RBP6.6□□□□□ -1.35
SYNE1-217ENST00000466159 CUBNO60494 3623 aa6.59□□□□□ -1.35
SYNE1-217ENST00000466159 TRBV27A0A0K0K1C4 114 aa6.59□□□□□ -1.35
SYNE1-217ENST00000466159 Q8N2B8 174 aa6.59□□□□□ -1.35
SYNE1-217ENST00000466159 TRBV6-5A0A0K0K1A5 114 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 MYMXA0A1B0GTQ4 84 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 A0A1W2PPM0 123 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 LINC01619G3V211 115 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 K7ERU9 68 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 GTF2H5Q6ZYL4 71 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 LRRC75A-AS1Q8N1F1 130 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 PHLDA1Q8WV24 401 aaPredicted RBP6.59□□□□□ -1.36
SYNE1-217ENST00000466159 PRADC1Q9BSG0 188 aa6.59□□□□□ -1.36
SYNE1-217ENST00000466159 IGLV4-69A0A075B6H9 119 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 C11orf86A6NJI1 115 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 E9PLD3 99 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 K7EP34 96 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 SAMD5Q5TGI4 173 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 TMEM61Q8N0U2 210 aa6.58□□□□□ -1.36
SYNE1-217ENST00000466159 HIST1H4GQ99525 98 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms