RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 J3QQQ9 107 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 IGHV3-33P01772 117 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 SRD5A1P18405 259 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 ASIPP42127 132 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 HERVK_113P61574 105 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 C9orf47Q6ZRZ4 202 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 Q8N9W7 124 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 TRBV7-9A0A0J9YWB2 115 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 FAM74A4Q5TZK3 123 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 VPS13CQ709C8 3753 aa8.82□□□□□ -1
CPSF3-202ENST00000460593 LGALS3P17931 250 aaKnown RBP8.81□□□□□ -1
CPSF3-202ENST00000460593 C15orf53Q8NAA6 179 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 METTL26Q96S19 204 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE12JA6NER3 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 IGIPA6NJ69 53 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE7O76087 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE12FP0CL80 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE12GP0CL81 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE12IP0CL82 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 GAGE4Q13068 117 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 PMVKQ15126 192 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 ODF3Q96PU9 254 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 TMEM262E9PQX1 116 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 SCGB2A1O75556 95 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 TRBV12-3P01733 135 aa8.81□□□□□ -1
CPSF3-202ENST00000460593 RNASE3P12724 160 aaKnown RBP8.81□□□□□ -1
CPSF3-202ENST00000460593 ODF3BA8MYP8 253 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 B9A039 149 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 CD3EP07766 207 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 UNQ9165/PRO28630Q6UXU0 137 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 TMEM263Q8WUH6 116 aaKnown RBP8.8□□□□□ -1
CPSF3-202ENST00000460593 IFITM1P13164 125 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 RPL32P62910 135 aaKnown RBP8.8□□□□□ -1
CPSF3-202ENST00000460593 LY6G5BQ8NDX9 201 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 ATRXP46100 2492 aa8.8□□□□□ -1
CPSF3-202ENST00000460593 SUMO4Q6EEV6 95 aa8.79□□□□□ -1
CPSF3-202ENST00000460593 LINC01620Q4KN68 170 aa8.79□□□□□ -1
CPSF3-202ENST00000460593 TMEM219Q86XT9 240 aa8.79□□□□□ -1
CPSF3-202ENST00000460593 TRAV8-4A0A0B4J246 113 aa8.79□□□□□ -1
CPSF3-202ENST00000460593 Q8N6K4 173 aa8.79□□□□□ -1
CPSF3-202ENST00000460593 DUX3Q96PT4 197 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 TRAV21A0A0B4J279 112 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 SDHAF1A6NFY7 115 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 TRIAP1O43715 76 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 PRSS2P07478 247 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 ZFP36P26651 326 aaKnown RBP8.78□□□□□ -1
CPSF3-202ENST00000460593 LINC00315P59091 139 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 RNASE13Q5GAN3 156 aaKnown RBP8.78□□□□□ -1
CPSF3-202ENST00000460593 IGFL3Q6UXB1 125 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 FAM110DQ8TAY7 271 aaPredicted RBP8.78□□□□□ -1
CPSF3-202ENST00000460593 CHCHD5Q9BSY4 110 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 PRO3102Q9H379 93 aa8.78□□□□□ -1
CPSF3-202ENST00000460593 CLEC2BQ92478 149 aa8.77□□□□□ -1
CPSF3-202ENST00000460593 IGHV3OR16-10A0A075B7F0 116 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 A0A0J9YXV3 536 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 A8MZ25 164 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 EDN2P20800 178 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 CREBBPQ92793 2442 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 IGHV3-11P01762 117 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 OR10J6PQ8NGY7 276 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 LINC00477Q96M19 166 aa8.77□□□□□ -1.01
CPSF3-202ENST00000460593 IGKV3-20P01619 116 aa8.76□□□□□ -1.01
CPSF3-202ENST00000460593 ITLN2Q8WWU7 325 aaPredicted RBP8.76□□□□□ -1.01
CPSF3-202ENST00000460593 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.76□□□□□ -1.012e-6■■■■□ 21.4
CPSF3-202ENST00000460593 ZNF56Q15929 161 aa8.76□□□□□ -1.01
CPSF3-202ENST00000460593 ZNF876PQ49A33 203 aa8.76□□□□□ -1.01
CPSF3-202ENST00000460593 TRAV8-3A0A0A6YYJ7 113 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 POLR2KP53803 58 aaKnown RBP8.75□□□□□ -1.01
CPSF3-202ENST00000460593 MEIG1Q5JSS6 88 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 SPXQ9BT56 116 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 KIF25-AS1Q9Y6Z4 181 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 CENPVL3A0A0U1RRI6 287 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 C2orf82Q6UX34 121 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 EEF1AKMT3Q96AZ1 226 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 H3BMM0 161 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 BRI3O95415 125 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 UBE2E1P51965 193 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 CFAP161Q6P656 301 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 CEMP1Q6PRD7 247 aaPredicted RBP8.75□□□□□ -1.01
CPSF3-202ENST00000460593 UBE2WQ96B02 151 aa8.75□□□□□ -1.01
CPSF3-202ENST00000460593 PRRC2AP48634 2157 aaKnown RBP8.75□□□□□ -1.01
CPSF3-202ENST00000460593 FOXC1Q12948 553 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 ATXN8Q156A1 80 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 TRAV12-3A0A0B4J271 114 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 DAND5Q8N907 189 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 Q8NA96 180 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 ZNF292O60281 2723 aa8.74□□□□□ -1.01
CPSF3-202ENST00000460593 TMEM223A0PJW6 202 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 ZNF22P17026 224 aaPredicted RBP8.73□□□□□ -1.01
CPSF3-202ENST00000460593 ADAMTSL4-AS1Q5T5F5 129 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 CDSNQ15517 529 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 PAPPA-AS1Q5QFB9 102 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 C9orf139Q6ZV77 190 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 DEFB123Q8N688 67 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 TRAV12-2A0A075B6T6 113 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 H7C423 109 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 VCYO14598 125 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 MRPL53Q96EL3 112 aaKnown RBP8.73□□□□□ -1.01
CPSF3-202ENST00000460593 U3KQE9 123 aa8.73□□□□□ -1.01
CPSF3-202ENST00000460593 A0A0J9YXY3 114 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms