RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CRYBA4P53673 196 aa8.27□□□□□ -1.09
LIMS1-207ENST00000422797 RPL11P62913 178 aaKnown RBP8.27□□□□□ -1.09
LIMS1-207ENST00000422797 CDSNQ15517 529 aa8.27□□□□□ -1.09
LIMS1-207ENST00000422797 ZNF418Q8TF45 676 aaPredicted RBP8.27□□□□□ -1.09
LIMS1-207ENST00000422797 TMEM89A2RUT3 159 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 A6NDX4 124 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 SDHAF1A6NFY7 115 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 TSHBP01222 138 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 TMEM219Q86XT9 240 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 C9orf85Q96MD7 179 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 MDFICQ9P1T7 246 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 IGF2RP11717 2491 aa8.26□□□□□ -1.09
LIMS1-207ENST00000422797 IGLV1-40P01703 118 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 P0DMU3 169 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 FAM231AP0DMU4 169 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 FAM231CP0DMU5 169 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 CKS1BP61024 79 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 TMEM170BQ5T4T1 132 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 PIMREGQ9BSJ6 248 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 EDA2RQ9HAV5 297 aa8.25□□□□□ -1.09
LIMS1-207ENST00000422797 FLNBO75369 2602 aaKnown RBP8.25□□□□□ -1.09
LIMS1-207ENST00000422797 F5H697 171 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 PF4V1P10720 104 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 SMCPP49901 116 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-207ENST00000422797 RNF152Q8N8N0 203 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 LINC01600Q96MT4 127 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 ASH1LQ9NR48 2969 aaKnown RBP8.24□□□□□ -1.09
LIMS1-207ENST00000422797 GCN1Q92616 2671 aaKnown RBP8.24□□□□□ -1.09
LIMS1-207ENST00000422797 ASPMQ8IZT6 3477 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 ACACAQ13085 2346 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 PCNX1Q96RV3 2341 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 TMEM223A0PJW6 202 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 TRBV12-3P01733 135 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 ZNF688P0C7X2 276 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 CFC1BP0CG36 223 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 CFC1P0CG37 223 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 SNRPD3P62318 126 aaKnown RBP8.24□□□□□ -1.09
LIMS1-207ENST00000422797 CDIP1Q9H305 208 aa8.24□□□□□ -1.09
LIMS1-207ENST00000422797 ZNF256Q9Y2P7 627 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-207ENST00000422797 SPENQ96T58 3664 aaKnown RBP8.23□□□□□ -1.09
LIMS1-207ENST00000422797 TRGV11A0A075B6L2 103 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 IGHV3-16A0A0C4DH30 117 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 TCL1BO95988 128 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 SCGB1C2P0DMR2 95 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 KLHL30-AS1Q8NEE0 82 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 AMELXQ99217 191 aa8.23□□□□□ -1.09
LIMS1-207ENST00000422797 A0A1W2PPR1 153 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 I3L3M4 83 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 M0QY20 66 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 SPINK8P0C7L1 97 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 INSL3P51460 131 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 CFHR3Q02985 330 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 CLEC2AQ6UVW9 174 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 Q6ZUT4 128 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 C20orf203Q8NBC4 194 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 DCANP1Q8TF63 244 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 ERG28Q9UKR5 140 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 PYGO1Q9Y3Y4 419 aa8.22□□□□□ -1.09
LIMS1-207ENST00000422797 IGHV1OR15-1A0A075B7D0 117 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 F6UB75 175 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 ATXN8Q156A1 80 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 ZNF56Q15929 161 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 Q5PR19 223 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 PIK3CD-AS1Q5SR53 167 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 ZNRF2Q8NHG8 242 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 RNF183Q96D59 192 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 ARHGAP32A7KAX9 2087 aa8.21□□□□□ -1.1
LIMS1-207ENST00000422797 AGRNO00468 2067 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 MAST4O15021 2626 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 RHODO00212 210 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 IGHV3-11P01762 117 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 IGHV3-33P01772 117 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 TSPEAR-AS2P59090 65 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 RPL39P62891 51 aaKnown RBP8.2□□□□□ -1.1
LIMS1-207ENST00000422797 LINC00527Q9UJ94 153 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 LOC400499M0QZD8 3231 aa8.2□□□□□ -1.1
LIMS1-207ENST00000422797 PIEZO2Q9H5I5 2752 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 A0A087WWL8 130 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 TRAV12-3A0A0B4J271 114 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 H3BUX3 64 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 M0R2P5 195 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 SLC25A20O43772 301 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 IGHV4-39P01824 125 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 ZNF22P17026 224 aaPredicted RBP8.19□□□□□ -1.1
LIMS1-207ENST00000422797 Q6ZS46 218 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 TMEM263Q8WUH6 116 aaKnown RBP8.19□□□□□ -1.1
LIMS1-207ENST00000422797 GEMIN7Q9H840 131 aaKnown RBP8.19□□□□□ -1.1
LIMS1-207ENST00000422797 A4D1N5 150 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 SPRY2O43597 315 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 GATA3P23771 443 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 ANKRD29Q8N6D5 301 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 PTH2Q96A98 100 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 CARD19Q96LW7 228 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 SPANXA1Q9NS26 97 aa8.19□□□□□ -1.1
LIMS1-207ENST00000422797 HELZ2Q9BYK8 2649 aaKnown RBP8.18□□□□□ -1.1
LIMS1-207ENST00000422797 TRBV30A0A0K0K1B3 111 aa8.18□□□□□ -1.1
LIMS1-207ENST00000422797 K7EQG2 157 aa8.18□□□□□ -1.1
LIMS1-207ENST00000422797 RPL13AP40429 203 aaKnown RBP8.18□□□□□ -1.1
LIMS1-207ENST00000422797 C10orf105Q8TEF2 133 aa8.18□□□□□ -1.1
LIMS1-207ENST00000422797 YAE1D1Q9NRH1 226 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms