RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 PRORYQ9H606 182 aa11.8□□□□□ -0.52
CDH1-202ENST00000422392 ZNF815PA8K554 130 aa11.8□□□□□ -0.52
CDH1-202ENST00000422392 FBN2P35556 2912 aa11.79□□□□□ -0.52
CDH1-202ENST00000422392 C11orf86A6NJI1 115 aa11.79□□□□□ -0.52
CDH1-202ENST00000422392 CFHR3Q02985 330 aa11.79□□□□□ -0.52
CDH1-202ENST00000422392 ZFP2Q6ZN57 461 aa11.79□□□□□ -0.52
CDH1-202ENST00000422392 PIEZO1Q92508 2521 aa11.79□□□□□ -0.52
CDH1-202ENST00000422392 NXPH4O95158 308 aa11.78□□□□□ -0.52
CDH1-202ENST00000422392 SCGB1D4Q6XE38 83 aa11.78□□□□□ -0.52
CDH1-202ENST00000422392 MDFICQ9P1T7 246 aa11.78□□□□□ -0.52
CDH1-202ENST00000422392 BRI3O95415 125 aa11.78□□□□□ -0.52
CDH1-202ENST00000422392 SFTA2Q6UW10 78 aa11.78□□□□□ -0.52
CDH1-202ENST00000422392 IGLV4-69A0A075B6H9 119 aa11.77□□□□□ -0.52
CDH1-202ENST00000422392 IGHV4-59P01825 116 aa11.77□□□□□ -0.52
CDH1-202ENST00000422392 SH2D6Q7Z4S9 175 aa11.77□□□□□ -0.52
CDH1-202ENST00000422392 POLR2KP53803 58 aaKnown RBP11.77□□□□□ -0.53
CDH1-202ENST00000422392 RRN3P1Q2M238 152 aa11.77□□□□□ -0.53
CDH1-202ENST00000422392 POM121L12Q8N7R1 296 aa11.77□□□□□ -0.53
CDH1-202ENST00000422392 ZNF256Q9Y2P7 627 aaPredicted RBP11.77□□□□□ -0.53
CDH1-202ENST00000422392 TRBV7-9A0A0J9YWB2 115 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 SDHAF1A6NFY7 115 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 IGIPA6NJ69 53 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 COX6B1P14854 86 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 ID1P41134 155 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 MORN3Q6PF18 240 aaPredicted RBP11.76□□□□□ -0.53
CDH1-202ENST00000422392 DUX5Q96PT3 197 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 IGHV4OR15-8A0A075B7B6 117 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 A0A087WW49 117 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 PPP1R17O96001 155 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 ETDBQ3ZM63 59 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 CACNA1AO00555 2505 aa11.76□□□□□ -0.53
CDH1-202ENST00000422392 MAPK1IP1LQ8NDC0 245 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 PGPEP1Q9NXJ5 209 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 PSMB8P28062 276 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 SRSF9Q13242 221 aaKnown RBP eCLIP11.75□□□□□ -0.53
CDH1-202ENST00000422392 SPINK13Q1W4C9 94 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 OPRPNQ99935 248 aaPredicted RBP11.75□□□□□ -0.53
CDH1-202ENST00000422392 TEX15Q9BXT5 2789 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 FAM208BQ5VWN6 2430 aa11.75□□□□□ -0.53
CDH1-202ENST00000422392 NDUFS8O00217 210 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 HOXA3O43365 443 aaPredicted RBP11.74□□□□□ -0.53
CDH1-202ENST00000422392 Q8N1Y9 231 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 KIR2DL4Q99706 377 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 ACACBO00763 2458 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 TSPEAR-AS2P59090 65 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 DEFB112Q30KQ8 113 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 A0A1B0GWB2 263 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 K7EMT4 169 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 PMVKQ15126 192 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 ZNF56Q15929 161 aa11.74□□□□□ -0.53
CDH1-202ENST00000422392 SPANXB1Q9NS25 103 aaPredicted RBP11.74□□□□□ -0.53
CDH1-202ENST00000422392 IGHV3-16A0A0C4DH30 117 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 VCYO14598 125 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 TMEM170BQ5T4T1 132 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 ZNRF2Q8NHG8 242 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 F8W1H4 67 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 LINC01619G3V211 115 aa11.73□□□□□ -0.53
CDH1-202ENST00000422392 MRPL16Q9NX20 251 aaKnown RBP11.73□□□□□ -0.53
CDH1-202ENST00000422392 SYNJ2BPP57105 145 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 MYO9AB2RTY4 2548 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 ZFYVE26Q68DK2 2539 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 A0A0J9YX75 114 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 B4DSR2 109 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 APOMO95445 188 aa11.72□□□□□ -0.53
CDH1-202ENST00000422392 INSL3P51460 131 aa11.71□□□□□ -0.53
CDH1-202ENST00000422392 GAGE13Q4V321 117 aa11.71□□□□□ -0.53
CDH1-202ENST00000422392 C9orf85Q96MD7 179 aa11.71□□□□□ -0.53
CDH1-202ENST00000422392 PRO0461Q9UI25 63 aa11.71□□□□□ -0.54
CDH1-202ENST00000422392 ZNF469Q96JG9 3925 aaPredicted RBP11.7□□□□□ -0.54
CDH1-202ENST00000422392 TRBV27A0A0K0K1C4 114 aa11.7□□□□□ -0.54
CDH1-202ENST00000422392 LGALS9O00182 355 aa11.7□□□□□ -0.54
CDH1-202ENST00000422392 A0A0J9YY99 117 aa11.7□□□□□ -0.54
CDH1-202ENST00000422392 M0QY20 66 aa11.7□□□□□ -0.54
CDH1-202ENST00000422392 HTN1P15515 57 aa11.7□□□□□ -0.54
CDH1-202ENST00000422392 RPL32P62910 135 aaKnown RBP11.7□□□□□ -0.54
CDH1-202ENST00000422392 TSSC4Q9Y5U2 329 aaPredicted RBP11.7□□□□□ -0.54
CDH1-202ENST00000422392 LRRK2Q5S007 2527 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 SNRPD3P62318 126 aaKnown RBP11.69□□□□□ -0.54
CDH1-202ENST00000422392 GTSF1LQ9H1H1 148 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 ABCA12Q86UK0 2595 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 LOC107984156A0A0G2JMH3 177 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 PRM2P04554 102 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 ARL17AQ8IVW1 177 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 TIMM17AQ99595 171 aa11.69□□□□□ -0.54
CDH1-202ENST00000422392 SPAG8Q99932 426 aaPredicted RBP11.69□□□□□ -0.54
CDH1-202ENST00000422392 IGHV3-64A0A075B6Q5 118 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 K7EQG2 157 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 TSPAN13O95857 204 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 UBE2D1P51668 147 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 HERVK_113P61574 105 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 ZNF876PQ49A33 203 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 TLN2Q9Y4G6 2542 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 IGHV1OR15-1A0A075B7D0 117 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 IGHV3-73A0A0B4J1V6 119 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 TMEM238C9JI98 176 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 TMEM141Q96I45 108 aa11.68□□□□□ -0.54
CDH1-202ENST00000422392 P0DMU3 169 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 FAM231AP0DMU4 169 aa11.67□□□□□ -0.54
CDH1-202ENST00000422392 FAM231CP0DMU5 169 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms