RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ANKRD39Q53RE8 183 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 LINC01006Q8NI28 216 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 MAP6D1Q9H9H5 199 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 MTORP42345 2549 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 A0A087WWL8 130 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 A0A1W2PRX2 142 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 RBMY1BA6NDE4 496 aaKnown RBP14.83□□□□□ -0.03
USP39-204ENST00000409766 RBMY1EA6NEQ0 496 aaKnown RBP14.83□□□□□ -0.03
USP39-204ENST00000409766 NUDT3O95989 172 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 PRSS1P07477 247 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 RBMY1DP0C7P1 496 aaKnown RBP14.83□□□□□ -0.03
USP39-204ENST00000409766 ORMDL2Q53FV1 153 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 COL5A1-AS1Q5SY13 56 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 ZMAT4Q9H898 229 aa14.83□□□□□ -0.03
USP39-204ENST00000409766 CCL24O00175 119 aa14.83□□□□□ -0.04
USP39-204ENST00000409766 STPG4Q8N801 248 aa14.83□□□□□ -0.04
USP39-204ENST00000409766 SCGB2A2Q13296 93 aa14.82□□□□□ -0.04
USP39-204ENST00000409766 SUMO4Q6EEV6 95 aa14.82□□□□□ -0.04
USP39-204ENST00000409766 SYT8Q8NBV8 401 aa14.82□□□□□ -0.04
USP39-204ENST00000409766 CITED2Q99967 270 aaPredicted RBP14.82□□□□□ -0.04
USP39-204ENST00000409766 ZNF256Q9Y2P7 627 aaPredicted RBP14.82□□□□□ -0.04
USP39-204ENST00000409766 HINT1P49773 126 aaPredicted RBP14.82□□□□□ -0.04
USP39-204ENST00000409766 SPAG8Q99932 426 aaPredicted RBP14.82□□□□□ -0.04
USP39-204ENST00000409766 TRGV11A0A075B6L2 103 aa14.81□□□□□ -0.04
USP39-204ENST00000409766 RPL32P62910 135 aaKnown RBP14.8□□□□□ -0.04
USP39-204ENST00000409766 CSTL1Q9H114 145 aa14.8□□□□□ -0.04
USP39-204ENST00000409766 ZMAT5Q9UDW3 170 aaKnown RBP14.8□□□□□ -0.04
USP39-204ENST00000409766 TSSC4Q9Y5U2 329 aaPredicted RBP14.8□□□□□ -0.04
USP39-204ENST00000409766 TOMM6Q96B49 74 aa14.8□□□□□ -0.04
USP39-204ENST00000409766 TMEM160Q9NX00 188 aa14.8□□□□□ -0.04
USP39-204ENST00000409766 CBY3A6NI87 242 aa14.79□□□□□ -0.04
USP39-204ENST00000409766 CRYGDP07320 174 aa14.79□□□□□ -0.04
USP39-204ENST00000409766 FGF6P10767 208 aa14.79□□□□□ -0.04
USP39-204ENST00000409766 LINC00469Q8N7U9 141 aa14.79□□□□□ -0.04
USP39-204ENST00000409766 WNK1Q9H4A3 2382 aa14.79□□□□□ -0.04
USP39-204ENST00000409766 TRAV25A0A0B4J276 109 aa14.78□□□□□ -0.04
USP39-204ENST00000409766 F5H697 171 aa14.78□□□□□ -0.04
USP39-204ENST00000409766 HILS1P60008 231 aa14.78□□□□□ -0.04
USP39-204ENST00000409766 ZNF418Q8TF45 676 aaPredicted RBP14.78□□□□□ -0.04
USP39-204ENST00000409766 HHLA3Q9XRX5 114 aa14.78□□□□□ -0.04
USP39-204ENST00000409766 POLR2KP53803 58 aaKnown RBP14.78□□□□□ -0.04
USP39-204ENST00000409766 FAM74A4Q5TZK3 123 aa14.78□□□□□ -0.04
USP39-204ENST00000409766 SETD2Q9BYW2 2564 aaPredicted RBP14.78□□□□□ -0.04
USP39-204ENST00000409766 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.77□□□□□ -0.04
USP39-204ENST00000409766 ZNF876PQ49A33 203 aa14.77□□□□□ -0.04
USP39-204ENST00000409766 IGKCP01834 107 aa14.76□□□□□ -0.05
USP39-204ENST00000409766 MPV17L2Q567V2 206 aa14.76□□□□□ -0.05
USP39-204ENST00000409766 C2orf91Q6ZV80 131 aa14.76□□□□□ -0.05
USP39-204ENST00000409766 SMR3AQ99954 134 aa14.76□□□□□ -0.05
USP39-204ENST00000409766 NEGR1Q7Z3B1 354 aa14.76□□□□□ -0.05
USP39-204ENST00000409766 DPM2O94777 84 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 ODF3L2Q3SX64 289 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 C2orf66Q6UXQ4 117 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 BOD1L2Q8IYS8 172 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 SCGB3A1Q96QR1 104 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 A0A087WX48 190 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 TRBV6-5A0A0K0K1A5 114 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 M0QY20 66 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 HTN1P15515 57 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 TCTAP57738 103 aa14.75□□□□□ -0.05
USP39-204ENST00000409766 MRPL35Q9NZE8 188 aaKnown RBP14.75□□□□□ -0.05
USP39-204ENST00000409766 ZNF56Q15929 161 aa14.74□□□□□ -0.05
USP39-204ENST00000409766 CLUHP3Q96NS8 147 aa14.74□□□□□ -0.05
USP39-204ENST00000409766 TRAV12-1A0A0B4J245 112 aa14.73□□□□□ -0.05
USP39-204ENST00000409766 VCYO14598 125 aa14.73□□□□□ -0.05
USP39-204ENST00000409766 MORN3Q6PF18 240 aaPredicted RBP14.73□□□□□ -0.05
USP39-204ENST00000409766 SDHAF1A6NFY7 115 aa14.73□□□□□ -0.05
USP39-204ENST00000409766 TRBV27A0A0K0K1C4 114 aa14.72□□□□□ -0.05
USP39-204ENST00000409766 DLEU1O43261 78 aa14.72□□□□□ -0.05
USP39-204ENST00000409766 PRM2P04554 102 aa14.72□□□□□ -0.05
USP39-204ENST00000409766 NDUFA7O95182 113 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 NMUP48645 174 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 BVES-AS1Q5T3Y7 98 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 C12orf54Q6X4T0 127 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 OTOGQ6ZRI0 2925 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 HIVEP2P31629 2446 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 ZFP2Q6ZN57 461 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 ERASQ7Z444 233 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 PCP2Q8IVA1 136 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 NEXN-AS1Q8NBZ9 246 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 KIR2DL4Q99706 377 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 LINC00467Q9BRT7 94 aa14.71□□□□□ -0.05
USP39-204ENST00000409766 NIPBLQ6KC79 2804 aaeCLIP14.71□□□□□ -0.065e-6■■■■■ 32.2
USP39-204ENST00000409766 ZNF25P17030 456 aaPredicted RBP14.7□□□□□ -0.06
USP39-204ENST00000409766 IGKV2D-26A0A0A0MRZ7 120 aa14.7□□□□□ -0.06
USP39-204ENST00000409766 G0S2P27469 103 aa14.7□□□□□ -0.06
USP39-204ENST00000409766 PROK1P58294 105 aa14.7□□□□□ -0.06
USP39-204ENST00000409766 ZC2HC1BQ5TFG8 222 aa14.7□□□□□ -0.06
USP39-204ENST00000409766 TRPT1Q86TN4 253 aaKnown RBP14.7□□□□□ -0.06
USP39-204ENST00000409766 NOTCH2Q04721 2471 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 ADARB2-AS1A8MUL3 147 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 F8VRH5 84 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 H7C1H1 209 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 INSP01308 110 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 PLNP26678 52 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 CYSLTR1Q9Y271 337 aa14.69□□□□□ -0.06
USP39-204ENST00000409766 M0R2P5 195 aa14.68□□□□□ -0.06
USP39-204ENST00000409766 ZNF415Q09FC8 603 aa14.68□□□□□ -0.06
USP39-204ENST00000409766 PIK3CD-AS1Q5SR53 167 aa14.68□□□□□ -0.06
USP39-204ENST00000409766 BAALCQ8WXS3 180 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms