RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 Q8N1Y9 231 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 TP53TG1Q9Y2A0 90 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 GAGE12BA1L429 117 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 A6NDN8 102 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 RPL24P83731 157 aaKnown RBP10.03□□□□□ -0.8
VPS54-203ENST00000409558 HHLA3Q9XRX5 114 aa10.02□□□□□ -0.8
VPS54-203ENST00000409558 ATP5LO75964 103 aa10.02□□□□□ -0.81
VPS54-203ENST00000409558 ZNF876PQ49A33 203 aa10.02□□□□□ -0.81
VPS54-203ENST00000409558 AMTNQ6UX39 209 aa10.02□□□□□ -0.81
VPS54-203ENST00000409558 SOCS3O14543 225 aa10.02□□□□□ -0.81
VPS54-203ENST00000409558 PRSS29PA6NIE9 313 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 PCP4P48539 62 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 OR11H1Q8NG94 326 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 C19orf54Q5BKX5 351 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 CNFNQ9BYD5 112 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 SUMO4Q6EEV6 95 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 COX8CQ7Z4L0 72 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 UBE2E2Q96LR5 201 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 SPCS1Q9Y6A9 102 aa10.01□□□□□ -0.81
VPS54-203ENST00000409558 IGLV2-18A0A075B6J9 118 aa10□□□□□ -0.81
VPS54-203ENST00000409558 SDHAF1A6NFY7 115 aa10□□□□□ -0.81
VPS54-203ENST00000409558 OR11H12B2RN74 326 aa10□□□□□ -0.81
VPS54-203ENST00000409558 SRSF2Q01130 221 aaKnown RBP10□□□□□ -0.81
VPS54-203ENST00000409558 SRSF9Q13242 221 aaKnown RBP eCLIP10□□□□□ -0.817e-6■■■■□ 19.5
VPS54-203ENST00000409558 OR11H2Q8NH07 326 aa10□□□□□ -0.81
VPS54-203ENST00000409558 DCANP1Q8TF63 244 aa10□□□□□ -0.81
VPS54-203ENST00000409558 IGHV3-38A0A0C4DH36 116 aa10□□□□□ -0.81
VPS54-203ENST00000409558 IGLV1-40P01703 118 aa10□□□□□ -0.81
VPS54-203ENST00000409558 PSMB8P28062 276 aa10□□□□□ -0.81
VPS54-203ENST00000409558 HSD52Q0P140 79 aa10□□□□□ -0.81
VPS54-203ENST00000409558 H7C2G1 150 aa10□□□□□ -0.81
VPS54-203ENST00000409558 RIPPLY3P57055 190 aa10□□□□□ -0.81
VPS54-203ENST00000409558 CEMP1Q6PRD7 247 aaPredicted RBP10□□□□□ -0.81
VPS54-203ENST00000409558 Q9UF83 564 aa10□□□□□ -0.81
VPS54-203ENST00000409558 APOMO95445 188 aa9.99□□□□□ -0.81
VPS54-203ENST00000409558 SLC25A16P16260 332 aa9.99□□□□□ -0.81
VPS54-203ENST00000409558 DYNLRB2Q8TF09 96 aa9.99□□□□□ -0.81
VPS54-203ENST00000409558 PHLDA1Q8WV24 401 aaPredicted RBP9.98□□□□□ -0.81
VPS54-203ENST00000409558 CST9LQ9H4G1 147 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 ADARB2-AS1A8MUL3 147 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 SMIM13P0DJ93 91 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 MRPL53Q96EL3 112 aaKnown RBP9.98□□□□□ -0.81
VPS54-203ENST00000409558 GCN1Q92616 2671 aaKnown RBP9.98□□□□□ -0.81
VPS54-203ENST00000409558 ZNF815PA8K554 130 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 ADAMTSL5Q6ZMM2 481 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 KIR2DL4Q99706 377 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 VPREB3Q9UKI3 123 aa9.98□□□□□ -0.81
VPS54-203ENST00000409558 A0A087WX48 190 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 IGHV3-53P01767 116 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 WFDC11Q8NEX6 87 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 XCL2Q9UBD3 114 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 OR1N2Q8NGR9 330 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 PRADC1Q9BSG0 188 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 SAMD5Q5TGI4 173 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 BAALCQ8WXS3 180 aa9.97□□□□□ -0.81
VPS54-203ENST00000409558 ORMDL2Q53FV1 153 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 H7C1H1 209 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 CDKN1BP46527 198 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 SEC11AP67812 179 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 TMEM61Q8N0U2 210 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 OR9G4Q8NGQ1 327 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 MRAP2Q96G30 205 aa9.96□□□□□ -0.81
VPS54-203ENST00000409558 FLNBO75369 2602 aaKnown RBP9.96□□□□□ -0.82
VPS54-203ENST00000409558 PSMG3-AS1Q96PY0 264 aa9.96□□□□□ -0.82
VPS54-203ENST00000409558 F8VRH5 84 aa9.96□□□□□ -0.82
VPS54-203ENST00000409558 SETXQ7Z333 2677 aaKnown RBP9.96□□□□□ -0.82
VPS54-203ENST00000409558 IGHV4-31P0DP07 118 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 NPC2P61916 151 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 LOC107984156A0A0G2JMH3 177 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 FABP2P12104 132 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 HLA-DRB4P13762 266 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 ARL17AQ8IVW1 177 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 ZNF843Q8N446 348 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 PLEKHB2Q96CS7 222 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 HLA-DRB4X5D2U9 266 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 A0A0J9YX75 114 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 C9orf118A6NHY6 69 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 LINC01587Q99440 93 aa9.95□□□□□ -0.82
VPS54-203ENST00000409558 IGHV1OR15-1A0A075B7D0 117 aa9.94□□□□□ -0.82
VPS54-203ENST00000409558 C11orf86A6NJI1 115 aa9.94□□□□□ -0.82
VPS54-203ENST00000409558 ZFP2Q6ZN57 461 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 GTF2H5Q6ZYL4 71 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 DLX4Q92988 240 aaPredicted RBP9.93□□□□□ -0.82
VPS54-203ENST00000409558 CBY1Q9Y3M2 126 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 ZNF702PQ9H963 129 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 MRPL16Q9NX20 251 aaKnown RBP9.93□□□□□ -0.82
VPS54-203ENST00000409558 OCIAD2Q56VL3 154 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 A0A0U1RRA0 63 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 H3BMG7 143 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 LGALS1P09382 135 aaKnown RBP9.93□□□□□ -0.82
VPS54-203ENST00000409558 RBMY1A1P0DJD3 496 aaKnown RBP9.93□□□□□ -0.82
VPS54-203ENST00000409558 RBMY1CP0DJD4 496 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 CFHR3Q02985 330 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 RBMY1FQ15415 496 aaKnown RBP9.93□□□□□ -0.82
VPS54-203ENST00000409558 ZNF580Q9UK33 172 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 TENM4Q6N022 2769 aa9.93□□□□□ -0.82
VPS54-203ENST00000409558 LENEPQ9Y5L5 61 aa9.92□□□□□ -0.82
VPS54-203ENST00000409558 H3BUA1 57 aa9.92□□□□□ -0.82
VPS54-203ENST00000409558 KLLNB2CW77 178 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 H3BRM9 83 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms