RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 A0A087WWL8 130 aa13.9□□□□□ -0.18
USP39-202ENST00000409025 SUMO2P61956 95 aaKnown RBP13.9□□□□□ -0.18
USP39-202ENST00000409025 SPATA45Q537H7 98 aa13.9□□□□□ -0.18
USP39-202ENST00000409025 LINC01587Q99440 93 aa13.9□□□□□ -0.18
USP39-202ENST00000409025 LINC00467Q9BRT7 94 aa13.9□□□□□ -0.18
USP39-202ENST00000409025 SMIM2Q9BVW6 85 aa13.9□□□□□ -0.18
USP39-202ENST00000409025 H0Y8G0 127 aa13.89□□□□□ -0.19
USP39-202ENST00000409025 RPL39LQ96EH5 51 aaKnown RBP13.89□□□□□ -0.19
USP39-202ENST00000409025 FAM110AQ9BQ89 295 aa13.89□□□□□ -0.19
USP39-202ENST00000409025 DEFA6Q01524 100 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 LAGE3Q14657 143 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 ZNF876PQ49A33 203 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 ZNF705AQ6ZN79 300 aaPredicted RBP13.88□□□□□ -0.19
USP39-202ENST00000409025 LINC00482Q8N8I6 264 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 F5H697 171 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 NUTF2P61970 127 aaKnown RBP13.88□□□□□ -0.19
USP39-202ENST00000409025 BEAN1Q3B7T3 259 aa13.88□□□□□ -0.19
USP39-202ENST00000409025 TRAV9-2A0A087WT02 112 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 ZNF415Q09FC8 603 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 FAM74A4Q5TZK3 123 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 LINC01545Q5VT33 79 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 SUMO4Q6EEV6 95 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 TMEM158Q8WZ71 300 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 XCL2Q9UBD3 114 aa13.87□□□□□ -0.19
USP39-202ENST00000409025 SETD2Q9BYW2 2564 aaPredicted RBP13.87□□□□□ -0.19
USP39-202ENST00000409025 FN1P02751 2386 aaKnown RBP13.86□□□□□ -0.19
USP39-202ENST00000409025 IFI27L1Q96BM0 104 aa13.86□□□□□ -0.19
USP39-202ENST00000409025 TCAPO15273 167 aa13.86□□□□□ -0.19
USP39-202ENST00000409025 NDUFAF3Q9BU61 184 aa13.86□□□□□ -0.19
USP39-202ENST00000409025 CRYGDP07320 174 aa13.85□□□□□ -0.19
USP39-202ENST00000409025 CYSRT1A8MQ03 144 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 K7EMI3 77 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.84□□□□□ -0.19
USP39-202ENST00000409025 TMEM208Q9BTX3 173 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 MCRIP2Q9BUT9 160 aaKnown RBP13.84□□□□□ -0.19
USP39-202ENST00000409025 NSD1Q96L73 2696 aaPredicted RBP13.84□□□□□ -0.19
USP39-202ENST00000409025 M0R2P5 195 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 PRM2P04554 102 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 ZNF56Q15929 161 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 MAJINQ3KP22 176 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 MIEN1Q9BRT3 115 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 ST20Q9HBF5 79 aa13.84□□□□□ -0.19
USP39-202ENST00000409025 HIVEP1P15822 2718 aa13.83□□□□□ -0.2
USP39-202ENST00000409025 ORMDL2Q53FV1 153 aa13.83□□□□□ -0.2
USP39-202ENST00000409025 C18orf15Q96N68 181 aa13.83□□□□□ -0.2
USP39-202ENST00000409025 C19orf73Q9NVV2 129 aa13.83□□□□□ -0.2
USP39-202ENST00000409025 PIK3CD-AS1Q5SR53 167 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 PTH2Q96A98 100 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 C14orf144Q96I85 54 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 CSTL1Q9H114 145 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 NUDT3O95989 172 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 RPL32P62910 135 aaKnown RBP13.82□□□□□ -0.2
USP39-202ENST00000409025 LGALS9BQ3B8N2 356 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 LGALS9CQ6DKI2 356 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 PMCHL2Q9BQD1 86 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 SPXQ9BT56 116 aa13.82□□□□□ -0.2
USP39-202ENST00000409025 C1orf158Q8N1D5 194 aa13.81□□□□□ -0.2
USP39-202ENST00000409025 C11orf72Q8NBR9 251 aa13.81□□□□□ -0.2
USP39-202ENST00000409025 HSBP1L1C9JCN9 74 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 ATP5LO75964 103 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 IGLL1P15814 213 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 WFDC10AQ9H1F0 79 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 IGHV3OR16-12A0A075B7B8 117 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 A8MWV9 139 aa13.8□□□□□ -0.2
USP39-202ENST00000409025 TRBV6-5A0A0K0K1A5 114 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 M0QY20 66 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 IGLC3P0DOY3 106 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 INSL3P51460 131 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 CITED1Q99966 193 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 UQCR10Q9UDW1 63 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 C2CD3Q4AC94 2353 aa13.79□□□□□ -0.2
USP39-202ENST00000409025 hDV102S1A0JD36 115 aa13.78□□□□□ -0.2
USP39-202ENST00000409025 POLR2KP53803 58 aaKnown RBP13.78□□□□□ -0.2
USP39-202ENST00000409025 GOLT1BQ9Y3E0 138 aa13.78□□□□□ -0.2
USP39-202ENST00000409025 VCYO14598 125 aa13.78□□□□□ -0.2
USP39-202ENST00000409025 RPL35AP18077 110 aaKnown RBP13.78□□□□□ -0.2
USP39-202ENST00000409025 C9orf66Q5T8R8 295 aa13.78□□□□□ -0.2
USP39-202ENST00000409025 PRSS1P07477 247 aa13.77□□□□□ -0.21
USP39-202ENST00000409025 AZU1P20160 251 aa13.77□□□□□ -0.21
USP39-202ENST00000409025 SDHAF1A6NFY7 115 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 MORN3Q6PF18 240 aaPredicted RBP13.76□□□□□ -0.21
USP39-202ENST00000409025 C1QTNF4Q9BXJ3 329 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 H7C1H1 209 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 NEGR1Q7Z3B1 354 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 TOMM6Q96B49 74 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 KIR2DL4Q99706 377 aa13.76□□□□□ -0.21
USP39-202ENST00000409025 GIG44P09565 113 aaPredicted RBP13.75□□□□□ -0.21
USP39-202ENST00000409025 G0S2P27469 103 aa13.75□□□□□ -0.21
USP39-202ENST00000409025 MRPL16Q9NX20 251 aaKnown RBP13.75□□□□□ -0.21
USP39-202ENST00000409025 TRBV27A0A0K0K1C4 114 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 EDA2RQ9HAV5 297 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 IGHV3-73A0A0B4J1V6 119 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.74□□□□□ -0.21
USP39-202ENST00000409025 CFAP126Q5VTH2 177 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 UFSP1Q6NVU6 142 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 C2orf66Q6UXQ4 117 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 GTSCR1Q86UQ5 136 aa13.74□□□□□ -0.21
USP39-202ENST00000409025 RHODO00212 210 aa13.73□□□□□ -0.21
USP39-202ENST00000409025 RNASE8Q8TDE3 154 aaKnown RBP13.73□□□□□ -0.21
USP39-202ENST00000409025 TMEM263Q8WUH6 116 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms