RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TMEM95Q3KNT9 176 aa15.73■□□□□ 0.11
CTCF-202ENST00000401394 TCL1BO95988 128 aa15.73■□□□□ 0.11
CTCF-202ENST00000401394 FBXL19-AS1Q494R0 122 aa15.73■□□□□ 0.11
CTCF-202ENST00000401394 CARD19Q96LW7 228 aa15.73■□□□□ 0.11
CTCF-202ENST00000401394 CIDEAO60543 219 aa15.72■□□□□ 0.11
CTCF-202ENST00000401394 CD7P09564 240 aa15.72■□□□□ 0.11
CTCF-202ENST00000401394 A0A0J9YY99 117 aa15.72■□□□□ 0.11
CTCF-202ENST00000401394 CRIP2P52943 208 aaPredicted RBP15.72■□□□□ 0.11
CTCF-202ENST00000401394 SUMO4Q6EEV6 95 aa15.72■□□□□ 0.11
CTCF-202ENST00000401394 C9orf139Q6ZV77 190 aa15.72■□□□□ 0.11
CTCF-202ENST00000401394 PF4V1P10720 104 aa15.71■□□□□ 0.11
CTCF-202ENST00000401394 ATP6V0BQ99437 205 aa15.71■□□□□ 0.11
CTCF-202ENST00000401394 ADARB2-AS1A8MUL3 147 aa15.71■□□□□ 0.11
CTCF-202ENST00000401394 J3QR89 54 aa15.71■□□□□ 0.11
CTCF-202ENST00000401394 EIF4EBP3O60516 100 aaPredicted RBP15.7■□□□□ 0.1
CTCF-202ENST00000401394 UBE2D1P51668 147 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 PSMG4Q5JS54 123 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 RHPN1-AS1Q9BWJ2 59 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 C2CD3Q4AC94 2353 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 PRM2P04554 102 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 CFC1BP0CG36 223 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 CFC1P0CG37 223 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 XGP55808 180 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 C10orf99Q6UWK7 81 aa15.7■□□□□ 0.1
CTCF-202ENST00000401394 IGHV4-38-2P0DP08 117 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 CKS1BP61024 79 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 NDUFA11Q86Y39 141 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 DLX4Q92988 240 aaPredicted RBP15.69■□□□□ 0.1
CTCF-202ENST00000401394 MDFICQ9P1T7 246 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 MRPL53Q96EL3 112 aaKnown RBP15.69■□□□□ 0.1
CTCF-202ENST00000401394 KIF25-AS1Q9Y6Z4 181 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 IGIPA6NJ69 53 aa15.69■□□□□ 0.1
CTCF-202ENST00000401394 C1QTNF4Q9BXJ3 329 aa15.68■□□□□ 0.1
CTCF-202ENST00000401394 KLK9Q9UKQ9 250 aa15.68■□□□□ 0.1
CTCF-202ENST00000401394 TRPT1Q86TN4 253 aaKnown RBP15.68■□□□□ 0.1
CTCF-202ENST00000401394 NACAE9PAV3 2078 aa15.68■□□□□ 0.1
CTCF-202ENST00000401394 SDHAF1A6NFY7 115 aa15.67■□□□□ 0.1
CTCF-202ENST00000401394 ELANEP08246 267 aa15.67■□□□□ 0.1
CTCF-202ENST00000401394 C19orf84I3L1E1 186 aa15.66■□□□□ 0.1
CTCF-202ENST00000401394 TRAV26-1A0A087WT03 109 aa15.66■□□□□ 0.1
CTCF-202ENST00000401394 RNASE13Q5GAN3 156 aaKnown RBP15.66■□□□□ 0.1
CTCF-202ENST00000401394 SPINK8P0C7L1 97 aa15.66■□□□□ 0.1
CTCF-202ENST00000401394 UCNP55089 124 aa15.66■□□□□ 0.1
CTCF-202ENST00000401394 HTN1P15515 57 aa15.65■□□□□ 0.1
CTCF-202ENST00000401394 IGHV3-73A0A0B4J1V6 119 aa15.65■□□□□ 0.1
CTCF-202ENST00000401394 SCGB1C2P0DMR2 95 aa15.65■□□□□ 0.1
CTCF-202ENST00000401394 GATA3P23771 443 aa15.65■□□□□ 0.1
CTCF-202ENST00000401394 CFAP46Q8IYW2 2715 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 IGHV3-30P01768 117 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 ZNF688P0C7X2 276 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 IGHV3-30-5P0DP03 117 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 LY6DQ14210 128 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 MOB4Q9Y3A3 225 aa15.64■□□□□ 0.09
CTCF-202ENST00000401394 H3BUX3 64 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 POLR2KP53803 58 aaKnown RBP15.63■□□□□ 0.09
CTCF-202ENST00000401394 UBE2D3P61077 147 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 UBE2D2P62837 147 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 C19orf54Q5BKX5 351 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 BEX4Q9NWD9 120 aaPredicted RBP15.63■□□□□ 0.09
CTCF-202ENST00000401394 Q9UF83 564 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 OVOL1O14753 267 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 CEMP1Q6PRD7 247 aaPredicted RBP15.63■□□□□ 0.09
CTCF-202ENST00000401394 FAM159AQ6UWV7 190 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 FAM19A4Q96LR4 140 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 AMELXQ99217 191 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 USP9XQ93008 2570 aaPredicted RBP15.63■□□□□ 0.09
CTCF-202ENST00000401394 PMVKQ15126 192 aa15.63■□□□□ 0.09
CTCF-202ENST00000401394 TRAV2A0A0B4J234 112 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 DUX5Q96PT3 197 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 MXRA5Q9NR99 2828 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 P0DMU3 169 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 FAM231AP0DMU4 169 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 FAM231CP0DMU5 169 aa15.62■□□□□ 0.09
CTCF-202ENST00000401394 A4D1N5 150 aa15.61■□□□□ 0.09
CTCF-202ENST00000401394 ZNF56Q15929 161 aa15.61■□□□□ 0.09
CTCF-202ENST00000401394 Q6ZSV7 163 aa15.61■□□□□ 0.09
CTCF-202ENST00000401394 ANKRD29Q8N6D5 301 aa15.61■□□□□ 0.09
CTCF-202ENST00000401394 A8MZ25 164 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 PROK1P58294 105 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 NPC2P61916 151 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 KLK9Q2XQG4 91 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 HIST2H2BDQ6DRA6 164 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 MYO9AB2RTY4 2548 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 NDUFA4O00483 81 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 IGHV4-61A0A0C4DH41 118 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 TMEM238LA0A1B0GVL6 79 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 A6NJY4 79 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 J3QQQ9 107 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 Q6ZUT4 128 aa15.6■□□□□ 0.09
CTCF-202ENST00000401394 SETD2Q9BYW2 2564 aaPredicted RBP15.6■□□□□ 0.09
CTCF-202ENST00000401394 A0A1B0GV72 72 aa15.59■□□□□ 0.09
CTCF-202ENST00000401394 LINC01619G3V211 115 aa15.59■□□□□ 0.09
CTCF-202ENST00000401394 GEMIN7Q9H840 131 aaKnown RBP15.59■□□□□ 0.09
CTCF-202ENST00000401394 LENEPQ9Y5L5 61 aa15.59■□□□□ 0.09
CTCF-202ENST00000401394 AKAP9Q99996 3911 aa15.59■□□□□ 0.09
CTCF-202ENST00000401394 A0A0J9YXV3 536 aa15.59■□□□□ 0.09
CTCF-202ENST00000401394 FAM223BA6NKX1 122 aa15.58■□□□□ 0.09
CTCF-202ENST00000401394 SPINK13Q1W4C9 94 aa15.58■□□□□ 0.09
CTCF-202ENST00000401394 FAM223AQ8IWN6 122 aa15.58■□□□□ 0.09
CTCF-202ENST00000401394 TLN2Q9Y4G6 2542 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms