RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IGHV4-61A0A0C4DH41 118 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 DEFB125Q8N687 156 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 FGF23Q9GZV9 251 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 C2orf70A6NJV1 201 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 B5MCH6 92 aa9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 PRB2P02812 416 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-204ENST00000389857 C14orf177Q52M58 125 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 MYCNOSP40205 109 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 KIF26AQ9ULI4 1882 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 K7EIM0 57 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 K7EMT4 169 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 H0Y9J4 135 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 LGALS9O00182 355 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 C11orf53Q8IXP5 236 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 SS18L2Q9UHA2 77 aa9.91□□□□□ -0.82
CCDC88C-204ENST00000389857 TMEM89A2RUT3 159 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 Q8N1Y9 231 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 A0A0J9YXV3 536 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 SPAG11BQ08648 103 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 PLXNB3Q9ULL4 1909 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 PDE6GP18545 87 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 Q8NFD4 153 aa9.9□□□□□ -0.82
CCDC88C-204ENST00000389857 FAM236AA0A1B0GUQ0 79 aa9.9□□□□□ -0.83
CCDC88C-204ENST00000389857 FAM236BA0A1B0GV22 79 aa9.9□□□□□ -0.83
CCDC88C-204ENST00000389857 WI2-2373I1.2A0A1W2PRP0 233 aa9.9□□□□□ -0.83
CCDC88C-204ENST00000389857 SPRY2O43597 315 aa9.9□□□□□ -0.83
CCDC88C-204ENST00000389857 TRBV12-3P01733 135 aa9.9□□□□□ -0.83
CCDC88C-204ENST00000389857 C11orf86A6NJI1 115 aa9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 LYPD6BQ8NI32 183 aa9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 J3KT08 172 aa9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 CTSGP08311 255 aa9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 WISP1O95388 367 aa9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 GRNP28799 593 aaKnown RBP9.89□□□□□ -0.83
CCDC88C-204ENST00000389857 TEN1Q86WV5 123 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 BLCAPP62952 87 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 HIGD1BQ9P298 99 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 GPHB5Q86YW7 130 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 C10orf105Q8TEF2 133 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 ESM1Q9NQ30 184 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 SMAD5-AS1Q9Y6J3 95 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 RITA1Q96K30 269 aa9.88□□□□□ -0.83
CCDC88C-204ENST00000389857 TMEM263Q8WUH6 116 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 RNF138Q8WVD3 245 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 KIR2DL5BA0A0G2JN68 375 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 KIR2DL5BA0A0G2JPC4 375 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 LECT2O14960 151 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 KIR2DL5AQ8N109 375 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 Q8N9W7 124 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 INSL3P51460 131 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 DYSFO75923 2080 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 DAND5Q8N907 189 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 COX7BP24311 80 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 TMEM131Q92545 1883 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 TRBV10-2A0A0K0K1G8 114 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 E9PLD3 99 aa9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 RPL39P62891 51 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-204ENST00000389857 DEFB135Q30KP9 77 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 NCOR1O75376 2440 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 KLK12Q9UKR0 248 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 ZGRF1Q86YA3 2104 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 IGKV4-1P06312 121 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 IGF2-ASQ6U949 168 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 SPRNQ5BIV9 151 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 IGFL2Q6UWQ7 119 aa9.86□□□□□ -0.83
CCDC88C-204ENST00000389857 KRTAP27-1Q3LI81 207 aa9.85□□□□□ -0.83
CCDC88C-204ENST00000389857 USF3Q68DE3 2245 aa9.85□□□□□ -0.83
CCDC88C-204ENST00000389857 IGHV1-58A0A0C4DH39 117 aa9.85□□□□□ -0.83
CCDC88C-204ENST00000389857 KIR2DL5BQ8NHK3 375 aa9.85□□□□□ -0.83
CCDC88C-204ENST00000389857 ZNF524Q96C55 264 aa9.85□□□□□ -0.83
CCDC88C-204ENST00000389857 ACACAQ13085 2346 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 CASC2Q6XLA1 102 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 H3BT86 120 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 IGKV1-17P01599 117 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 MIR7-3HGQ8N6C7 128 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 CTRLP40313 264 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 MSRB1Q9NZV6 116 aa9.84□□□□□ -0.83
CCDC88C-204ENST00000389857 CRYGBP07316 175 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 CLEC2BQ92478 149 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 SVIPQ8NHG7 77 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 PRO0255Q9UI72 69 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 ATRXP46100 2492 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 DAZAP2Q15038 168 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 ANKRD39Q53RE8 183 aa9.83□□□□□ -0.84
CCDC88C-204ENST00000389857 TRBV6-1A0A0K0K1D8 114 aa9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 RNF183Q96D59 192 aa9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 TEX22C9J3V5 150 aa9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 CNOT1A5YKK6 2376 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 GTSF1Q8WW33 167 aa9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 DENND4CQ5VZ89 1909 aa9.82□□□□□ -0.84
CCDC88C-204ENST00000389857 TRBV10-1A0A0K0K1A3 114 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 FOXI1Q12951 378 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 PATE2Q6UY27 113 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 PKDREJQ9NTG1 2253 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 DEFB4AO15263 64 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 COA6Q5JTJ3 125 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 LINC00173Q6ZV60 143 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 FAM110AQ9BQ89 295 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 TAX1BP3O14907 124 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 FXYD2P54710 66 aa9.81□□□□□ -0.84
CCDC88C-204ENST00000389857 C11orf45Q8TAV5 145 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms