RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 F5H768 121 aa11.67□□□□□ -0.54
NPHP4-201ENST00000378156 CCL24O00175 119 aa11.67□□□□□ -0.54
NPHP4-201ENST00000378156 CEP295Q9C0D2 2601 aa11.67□□□□□ -0.54
NPHP4-201ENST00000378156 TMEM258P61165 79 aa11.67□□□□□ -0.54
NPHP4-201ENST00000378156 HERVK_113P63121 156 aa11.67□□□□□ -0.54
NPHP4-201ENST00000378156 ZNRF2Q8NHG8 242 aa11.66□□□□□ -0.54
NPHP4-201ENST00000378156 CRYBA4P53673 196 aa11.66□□□□□ -0.54
NPHP4-201ENST00000378156 RBAKDNA6NC62 111 aa11.66□□□□□ -0.54
NPHP4-201ENST00000378156 IGLL5B9A064 214 aa11.66□□□□□ -0.54
NPHP4-201ENST00000378156 PRSS29PA6NIE9 313 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 PFN2P35080 140 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 TMEM243Q9BU79 118 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 SPRY2O43597 315 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 BUB3O43684 328 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 CRYGCP07315 174 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 RHOHQ15669 191 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 PCP2Q8IVA1 136 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 GATA1P15976 413 aaPredicted RBP11.65□□□□□ -0.54
NPHP4-201ENST00000378156 APOC4P55056 127 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 DSCR8Q96T75 97 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 CITED2Q99967 270 aaPredicted RBP11.65□□□□□ -0.54
NPHP4-201ENST00000378156 SIRPDQ9H106 197 aa11.65□□□□□ -0.54
NPHP4-201ENST00000378156 CFHR4Q92496 578 aa11.65□□□□□ -0.55
NPHP4-201ENST00000378156 IGKV1D-37A0A075B6S9 117 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 CEP192Q8TEP8 1941 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 YPEL4Q96NS1 127 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 MSRB1Q9NZV6 116 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 GNRH2O43555 120 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 CRLF1O75462 422 aa11.64□□□□□ -0.55
NPHP4-201ENST00000378156 PRORYQ9H606 182 aa11.63□□□□□ -0.55
NPHP4-201ENST00000378156 LRP4O75096 1905 aa11.63□□□□□ -0.55
NPHP4-201ENST00000378156 SLURP1P55000 103 aa11.63□□□□□ -0.55
NPHP4-201ENST00000378156 IGHV3-38A0A0C4DH36 116 aa11.62□□□□□ -0.55
NPHP4-201ENST00000378156 RNASE8Q8TDE3 154 aaKnown RBP11.62□□□□□ -0.55
NPHP4-201ENST00000378156 SCRT2Q9NQ03 307 aa11.62□□□□□ -0.55
NPHP4-201ENST00000378156 HIGD1BQ9P298 99 aa11.62□□□□□ -0.55
NPHP4-201ENST00000378156 SORL1Q92673 2214 aa11.62□□□□□ -0.55
NPHP4-201ENST00000378156 SH2D6Q7Z4S9 175 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 TEN1Q86WV5 123 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 LINC00574Q9H8X3 128 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 SS18L2Q9UHA2 77 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 LMO4P61968 165 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 ZNF561-AS1K7EIQ3 104 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 IGLV2-8P01709 118 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 RBM3P98179 157 aaKnown RBP11.61□□□□□ -0.55
NPHP4-201ENST00000378156 C16orf54Q6UWD8 224 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 C2CD3Q4AC94 2353 aa11.61□□□□□ -0.55
NPHP4-201ENST00000378156 IGHG2P01859 326 aa11.6□□□□□ -0.55
NPHP4-201ENST00000378156 PRSS47A8MTI9 375 aa11.6□□□□□ -0.55
NPHP4-201ENST00000378156 BAALC-AS2P0C853 105 aa11.6□□□□□ -0.55
NPHP4-201ENST00000378156 SUMO4Q6EEV6 95 aa11.6□□□□□ -0.55
NPHP4-201ENST00000378156 MRAPQ8TCY5 172 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 NACAE9PAV3 2078 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 WI2-2373I1.2A0A1W2PRP0 233 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 PRAC2D3DTV9 90 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 ANKRD39Q53RE8 183 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 PSCAO43653 123 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 C19orf84I3L1E1 186 aa11.59□□□□□ -0.55
NPHP4-201ENST00000378156 DSCAMO60469 2012 aa11.58□□□□□ -0.56
NPHP4-201ENST00000378156 LINC00322Q6ZN03 302 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-201ENST00000378156 FANCD2OSQ96PS1 177 aa11.58□□□□□ -0.56
NPHP4-201ENST00000378156 HERV-K104P63124 156 aa11.58□□□□□ -0.56
NPHP4-201ENST00000378156 SMIM20Q8N5G0 67 aa11.58□□□□□ -0.56
NPHP4-201ENST00000378156 APRG1Q8IVJ8 170 aa11.58□□□□□ -0.56
NPHP4-201ENST00000378156 TAX1BP3O14907 124 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 TINCRA0A1B0GVN0 87 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 ATOX1O00244 68 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 U3KQE9 123 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 C19orf71A6NCJ1 209 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 NXPH4O95158 308 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 NKAPP1Q8N9T2 125 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 K7EMT4 169 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 ORMDL1Q9P0S3 153 aa11.57□□□□□ -0.56
NPHP4-201ENST00000378156 IGHV4OR15-8A0A075B7B6 117 aa11.56□□□□□ -0.56
NPHP4-201ENST00000378156 A0A087WW49 117 aa11.56□□□□□ -0.56
NPHP4-201ENST00000378156 NOP10Q9NPE3 64 aaKnown RBP11.56□□□□□ -0.56
NPHP4-201ENST00000378156 ANKRD11Q6UB99 2663 aaPredicted RBP11.56□□□□□ -0.56
NPHP4-201ENST00000378156 TRAV12-1A0A0B4J245 112 aa11.56□□□□□ -0.56
NPHP4-201ENST00000378156 GPHB5Q86YW7 130 aa11.56□□□□□ -0.56
NPHP4-201ENST00000378156 EML5Q05BV3 1969 aa11.55□□□□□ -0.56
NPHP4-201ENST00000378156 H0YGX0 51 aa11.55□□□□□ -0.56
NPHP4-201ENST00000378156 GDF5OSQ5U4N7 250 aa11.55□□□□□ -0.56
NPHP4-201ENST00000378156 TRAV25A0A0B4J276 109 aa11.55□□□□□ -0.56
NPHP4-201ENST00000378156 KIAA1549Q9HCM3 1950 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 TMEM89A2RUT3 159 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 A0A0B4J2C4 111 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 C2orf70A6NJV1 201 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 WFDC2Q14508 124 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 A6NDX4 124 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 ODF3BA8MYP8 253 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 FSTL3O95633 263 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 LOXL1Q08397 574 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-201ENST00000378156 LINC01620Q4KN68 170 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 HCFC1P51610 2035 aa11.54□□□□□ -0.56
NPHP4-201ENST00000378156 TNFRSF13BO14836 293 aaPredicted RBP11.54□□□□□ -0.56
NPHP4-201ENST00000378156 FOXI1Q12951 378 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 Q9H8V8 135 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 J3KT08 172 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 FXYD2P54710 66 aa11.53□□□□□ -0.56
NPHP4-201ENST00000378156 SLC25A29Q8N8R3 303 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms