RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MOB4Q9Y3A3 225 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 RPL39P62891 51 aaKnown RBP15.87■□□□□ 0.13
UPF3A-202ENST00000375299 SUMO4Q6EEV6 95 aa15.87■□□□□ 0.13
UPF3A-202ENST00000375299 C10orf126Q8N4M7 172 aa15.87■□□□□ 0.13
UPF3A-202ENST00000375299 CRIP2P52943 208 aaPredicted RBP15.87■□□□□ 0.13
UPF3A-202ENST00000375299 XGP55808 180 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 TMEM170BQ5T4T1 132 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 KIR2DL4Q99706 377 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 VCX2Q9H322 139 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 A8MWV9 139 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 VCYO14598 125 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 RPL11P62913 178 aaKnown RBP15.86■□□□□ 0.13
UPF3A-202ENST00000375299 DEFB104AQ8WTQ1 72 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 CLUHP3Q96NS8 147 aa15.86■□□□□ 0.13
UPF3A-202ENST00000375299 ZNRF2Q8NHG8 242 aa15.85■□□□□ 0.13
UPF3A-202ENST00000375299 MED13LQ71F56 2210 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 ZNF876PQ49A33 203 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 AMELXQ99217 191 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 JPT2Q9H910 190 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 TRAV26-1A0A087WT03 109 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 WFDC12Q8WWY7 111 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 PRO1854Q9UHT4 67 aa15.84■□□□□ 0.13
UPF3A-202ENST00000375299 IGKV3-7A0A075B6H7 116 aa15.83■□□□□ 0.12
UPF3A-202ENST00000375299 J3QQQ9 107 aa15.83■□□□□ 0.12
UPF3A-202ENST00000375299 SVEP1Q4LDE5 3571 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 SDHAF1A6NFY7 115 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 TGFAP01135 160 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 LMO4P61968 165 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 FAM159AQ6UWV7 190 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 A0A087WWL8 130 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 KLLNB2CW77 178 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 ZNF688P0C7X2 276 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 SCGB1C2P0DMR2 95 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 LGALS3P17931 250 aaKnown RBP15.82■□□□□ 0.12
UPF3A-202ENST00000375299 ANKRD29Q8N6D5 301 aa15.82■□□□□ 0.12
UPF3A-202ENST00000375299 F5H697 171 aa15.81■□□□□ 0.12
UPF3A-202ENST00000375299 TRBV27A0A0K0K1C4 114 aa15.8■□□□□ 0.12
UPF3A-202ENST00000375299 UBTD1Q9HAC8 227 aa15.8■□□□□ 0.12
UPF3A-202ENST00000375299 BPESC1Q9GZL8 116 aa15.8■□□□□ 0.12
UPF3A-202ENST00000375299 TRBV6-5A0A0K0K1A5 114 aa15.79■□□□□ 0.12
UPF3A-202ENST00000375299 IGHV3-11P01762 117 aa15.79■□□□□ 0.12
UPF3A-202ENST00000375299 RHPN1-AS1Q9BWJ2 59 aa15.79■□□□□ 0.12
UPF3A-202ENST00000375299 COL6A6A6NMZ7 2263 aa15.79■□□□□ 0.12
UPF3A-202ENST00000375299 LGALS9O00182 355 aa15.79■□□□□ 0.12
UPF3A-202ENST00000375299 Q5PR19 223 aa15.78■□□□□ 0.12
UPF3A-202ENST00000375299 USMG5Q96IX5 58 aa15.78■□□□□ 0.12
UPF3A-202ENST00000375299 IGHV3OR16-10A0A075B7F0 116 aa15.78■□□□□ 0.12
UPF3A-202ENST00000375299 SPTBN1Q01082 2364 aaKnown RBP15.78■□□□□ 0.12
UPF3A-202ENST00000375299 A4D1N5 150 aa15.77■□□□□ 0.11
UPF3A-202ENST00000375299 LEPROTO15243 131 aa15.77■□□□□ 0.11
UPF3A-202ENST00000375299 H3BUA1 57 aa15.76■□□□□ 0.11
UPF3A-202ENST00000375299 IGHV1-69P01742 117 aa15.76■□□□□ 0.11
UPF3A-202ENST00000375299 TMEM223A0PJW6 202 aa15.76■□□□□ 0.11
UPF3A-202ENST00000375299 SLC25A20O43772 301 aa15.76■□□□□ 0.11
UPF3A-202ENST00000375299 ZNF256Q9Y2P7 627 aaPredicted RBP15.76■□□□□ 0.11
UPF3A-202ENST00000375299 TMEM262E9PQX1 116 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 M0QXV9 152 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 EIF4EBP3O60516 100 aaPredicted RBP15.75■□□□□ 0.11
UPF3A-202ENST00000375299 BRI3O95415 125 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 IGHV3-33P01772 117 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 SRD5A1P18405 259 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 NSUN5P1Q3KNT7 163 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 FAM74A4Q5TZK3 123 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 TMEM263Q8WUH6 116 aaKnown RBP15.75■□□□□ 0.11
UPF3A-202ENST00000375299 RAX2Q96IS3 184 aa15.75■□□□□ 0.11
UPF3A-202ENST00000375299 TRAV12-3A0A0B4J271 114 aa15.74■□□□□ 0.11
UPF3A-202ENST00000375299 HIVEP3Q5T1R4 2406 aa15.74■□□□□ 0.11
UPF3A-202ENST00000375299 A0A0B4J2C4 111 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 RHOHQ15669 191 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 ERG28Q9UKR5 140 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 ZFHX3Q15911 3703 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 C9JAW5 83 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 PF4V1P10720 104 aa15.73■□□□□ 0.11
UPF3A-202ENST00000375299 OPRPNQ99935 248 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-202ENST00000375299 DAZ1Q9NQZ3 744 aaKnown RBP15.73■□□□□ 0.11
UPF3A-202ENST00000375299 C9orf85Q96MD7 179 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 TRAV2A0A0B4J234 112 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 P0DMU3 169 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 FAM231AP0DMU4 169 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 FAM231CP0DMU5 169 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 ID1P41134 155 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 ZNF56Q15929 161 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 BRD3OSQ6XYD6 125 aa15.72■□□□□ 0.11
UPF3A-202ENST00000375299 M0QY20 66 aa15.71■□□□□ 0.11
UPF3A-202ENST00000375299 IGHG2P01859 326 aa15.71■□□□□ 0.11
UPF3A-202ENST00000375299 LY6DQ14210 128 aa15.71■□□□□ 0.11
UPF3A-202ENST00000375299 TRPT1Q86TN4 253 aaKnown RBP15.71■□□□□ 0.11
UPF3A-202ENST00000375299 ZNF22P17026 224 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-202ENST00000375299 MUSTN1Q8IVN3 82 aa15.71■□□□□ 0.11
UPF3A-202ENST00000375299 IGHV3-16A0A0C4DH30 117 aa15.7■□□□□ 0.1
UPF3A-202ENST00000375299 RNF183Q96D59 192 aa15.7■□□□□ 0.1
UPF3A-202ENST00000375299 RHODO00212 210 aa15.7■□□□□ 0.1
UPF3A-202ENST00000375299 EDN2P20800 178 aa15.7■□□□□ 0.1
UPF3A-202ENST00000375299 LY6EQ16553 131 aa15.7■□□□□ 0.1
UPF3A-202ENST00000375299 DCANP1Q8TF63 244 aa15.69■□□□□ 0.1
UPF3A-202ENST00000375299 MDFICQ9P1T7 246 aa15.69■□□□□ 0.1
UPF3A-202ENST00000375299 IGHV3-64A0A075B6Q5 118 aa15.69■□□□□ 0.1
UPF3A-202ENST00000375299 H7C2G1 150 aa15.69■□□□□ 0.1
UPF3A-202ENST00000375299 ZFAND6Q6FIF0 208 aa15.69■□□□□ 0.1
UPF3A-202ENST00000375299 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms