RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SONP18583 2426 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 CDK2AP2O75956 126 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 HERV-K104P63124 156 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 U3KQE9 123 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 F5H768 121 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 MAPK1IP1LQ8NDC0 245 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 C1orf43Q9BWL3 253 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 SORL1Q92673 2214 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 BRWD1-AS2P59051 145 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 CLPSL2Q6UWE3 100 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 Q6ZUT4 128 aa15.11■□□□□ 0.01
CCDC88B-202ENST00000356786 GATA3P23771 443 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 SND1-IT1Q9HBX3 110 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 ZNF106Q9H2Y7 1883 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 TEX22C9J3V5 150 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 H3BT86 120 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 WI2-2373I1.2A0A1W2PRP0 233 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 J3KT08 172 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 IGLV2-23P01705 113 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 C5orf38Q86SI9 138 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 XCL1P47992 114 aa15.1■□□□□ 0.01
CCDC88B-202ENST00000356786 CLEC2BQ92478 149 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 UTRNP46939 3433 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 NDUFA11Q86Y39 141 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 TIMM17AQ99595 171 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 TRBV6-1A0A0K0K1D8 114 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 H0YGX0 51 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 MT-ATP8P03928 68 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 NPBQ8NG41 125 aa15.09■□□□□ 0.01
CCDC88B-202ENST00000356786 CENPVL3A0A0U1RRI6 287 aa15.08■□□□□ 0.01
CCDC88B-202ENST00000356786 ANGP03950 147 aaKnown RBP15.08■□□□□ 0.01
CCDC88B-202ENST00000356786 CRIP3Q6Q6R5 217 aa15.08■□□□□ 0.01
CCDC88B-202ENST00000356786 IGKV1D-37A0A075B6S9 117 aa15.08■□□□□ 0
CCDC88B-202ENST00000356786 A0A096LPF7 62 aa15.08■□□□□ 0
CCDC88B-202ENST00000356786 MRPL23Q16540 153 aaKnown RBP15.08■□□□□ 0
CCDC88B-202ENST00000356786 NKAPP1Q8N9T2 125 aa15.08■□□□□ 0
CCDC88B-202ENST00000356786 MBD6Q96DN6 1003 aa15.08■□□□□ 0
CCDC88B-202ENST00000356786 LGALS9O00182 355 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 DAD1P61803 113 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 TCL1BO95988 128 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 TRAV4A0A0B4J268 109 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 RNF223E7ERA6 249 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 H3BUA1 57 aa15.07■□□□□ 0
CCDC88B-202ENST00000356786 K7ENP7 123 aa15.06■□□□□ 0
CCDC88B-202ENST00000356786 PRB1P04280 392 aa15.06■□□□□ 0
CCDC88B-202ENST00000356786 HOXB4P17483 251 aaPredicted RBP15.06■□□□□ 0
CCDC88B-202ENST00000356786 MLST8Q9BVC4 326 aa15.06■□□□□ 0
CCDC88B-202ENST00000356786 SPANXB1Q9NS25 103 aaPredicted RBP15.06■□□□□ 0
CCDC88B-202ENST00000356786 PIFOQ8TCI5 191 aa15.06■□□□□ 0
CCDC88B-202ENST00000356786 NBL1P41271 181 aa15.05■□□□□ 0
CCDC88B-202ENST00000356786 C16orf54Q6UWD8 224 aa15.05■□□□□ 0
CCDC88B-202ENST00000356786 C9orf47Q6ZRZ4 202 aa15.05■□□□□ 0
CCDC88B-202ENST00000356786 DKK4Q9UBT3 224 aa15.05■□□□□ -0
CCDC88B-202ENST00000356786 ELANEP08246 267 aa15.04■□□□□ -0
CCDC88B-202ENST00000356786 PRO3102Q9H379 93 aa15.04■□□□□ -0
CCDC88B-202ENST00000356786 NOP10Q9NPE3 64 aaKnown RBP15.04■□□□□ -0
CCDC88B-202ENST00000356786 IGLV1-47P01700 117 aa15.04■□□□□ -0
CCDC88B-202ENST00000356786 DEFB1P60022 68 aa15.04■□□□□ -0
CCDC88B-202ENST00000356786 hADV29S1A0JD25 119 aa15.03■□□□□ -0
CCDC88B-202ENST00000356786 MED12LQ86YW9 2145 aa15.03■□□□□ -0
CCDC88B-202ENST00000356786 WT1P19544 449 aaPredicted RBP15.03■□□□□ -0
CCDC88B-202ENST00000356786 AJUBAQ96IF1 538 aa15.03■□□□□ -0
CCDC88B-202ENST00000356786 TM2D2Q9BX73 214 aa15.03■□□□□ -0
CCDC88B-202ENST00000356786 ZNF80P51504 273 aaPredicted RBP15.03■□□□□ -0
CCDC88B-202ENST00000356786 RNF114Q9Y508 228 aa15.02■□□□□ -0
CCDC88B-202ENST00000356786 Q8N1Y9 231 aa15.02■□□□□ -0
CCDC88B-202ENST00000356786 NDUFV3P56181 108 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-202ENST00000356786 Q8N9W7 124 aa15.01□□□□□ -0.01
CCDC88B-202ENST00000356786 OPRPNQ99935 248 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-202ENST00000356786 PCDH15Q96QU1 1955 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 LECT2O14960 151 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 CRYGBP07316 175 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 HIST2H2BCQ6DN03 193 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 IGKV2D-26A0A0A0MRZ7 120 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 PSMB8P28062 276 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 MSMPQ1L6U9 139 aa15□□□□□ -0.01
CCDC88B-202ENST00000356786 PSCAO43653 123 aa14.99□□□□□ -0.01
CCDC88B-202ENST00000356786 GRNP28799 593 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-202ENST00000356786 IGHV3-30-3P0DP02 117 aa14.99□□□□□ -0.01
CCDC88B-202ENST00000356786 BLCAPP62952 87 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 A0A1W2PNU3 283 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 LINC00643Q86TS7 51 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 C20orf203Q8NBC4 194 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 COX7B2Q8TF08 81 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 VSIG2Q96IQ7 327 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 FANCD2OSQ96PS1 177 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 KIAA1549LQ6ZVL6 1849 aa14.98□□□□□ -0.01
CCDC88B-202ENST00000356786 IGHG2P01859 326 aa14.97□□□□□ -0.01
CCDC88B-202ENST00000356786 MED14OSP0DP75 135 aa14.97□□□□□ -0.01
CCDC88B-202ENST00000356786 IGHV1-58A0A0C4DH39 117 aa14.97□□□□□ -0.01
CCDC88B-202ENST00000356786 APRG1Q8IVJ8 170 aa14.97□□□□□ -0.01
CCDC88B-202ENST00000356786 IGHV4-59P01825 116 aa14.96□□□□□ -0.01
CCDC88B-202ENST00000356786 DEFB136Q30KP8 78 aa14.96□□□□□ -0.01
CCDC88B-202ENST00000356786 TEX49A0A1B0GTD5 131 aa14.96□□□□□ -0.01
CCDC88B-202ENST00000356786 UBE2DNLQ8IWF7 75 aa14.96□□□□□ -0.01
CCDC88B-202ENST00000356786 CGB3P0DN86 165 aa14.96□□□□□ -0.02
CCDC88B-202ENST00000356786 CGB7P0DN87 165 aa14.96□□□□□ -0.02
CCDC88B-202ENST00000356786 Q71RC1 249 aaPredicted RBP14.96□□□□□ -0.02
CCDC88B-202ENST00000356786 IGLC6P0CF74 106 aa14.95□□□□□ -0.02
CCDC88B-202ENST00000356786 IGHV4-4A0A075B6R2 117 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms