RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 DLX1P56177 255 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 IL11RAQ14626 422 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 SPANXN1Q5VSR9 72 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 CCL13Q99616 98 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 TTTY12Q9BZ98 90 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 ANKRD11Q6UB99 2663 aaPredicted RBP11.9□□□□□ -0.5
RTN3-205ENST00000356000 ACACAQ13085 2346 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 GATA4P43694 442 aa11.9□□□□□ -0.5
RTN3-205ENST00000356000 TRBV7-1A0A0A6YYK4 115 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 IGIPA6NJ69 53 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 K7EIM0 57 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 LEPROTO15243 131 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 HES7Q9BYE0 225 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 PEMTQ9UBM1 199 aa11.9□□□□□ -0.51
RTN3-205ENST00000356000 TRAV13-1A0A0B4J241 112 aa11.89□□□□□ -0.51
RTN3-205ENST00000356000 RAI1Q7Z5J4 1906 aaPredicted RBP11.89□□□□□ -0.51
RTN3-205ENST00000356000 RPL39LQ96EH5 51 aaKnown RBP11.89□□□□□ -0.51
RTN3-205ENST00000356000 DYNAPQ8N1N2 210 aa11.89□□□□□ -0.51
RTN3-205ENST00000356000 A0A0J9YX75 114 aa11.88□□□□□ -0.51
RTN3-205ENST00000356000 SDHAF1A6NFY7 115 aa11.88□□□□□ -0.51
RTN3-205ENST00000356000 ENSAO43768 121 aaKnown RBP11.88□□□□□ -0.51
RTN3-205ENST00000356000 KLRB1Q12918 225 aa11.88□□□□□ -0.51
RTN3-205ENST00000356000 IGFL4Q6B9Z1 124 aa11.88□□□□□ -0.51
RTN3-205ENST00000356000 LINC00311Q8N616 119 aa11.88□□□□□ -0.51
RTN3-205ENST00000356000 CCL8P80075 99 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 MSMPQ1L6U9 139 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 RNF152Q8N8N0 203 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 C8orf31Q8N9H6 132 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 DEFB108BQ8NET1 73 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 TINCRA0A1B0GVN0 87 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 RPL18AQ02543 176 aaKnown RBP11.87□□□□□ -0.51
RTN3-205ENST00000356000 ZNF876PQ49A33 203 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 TMEM141Q96I45 108 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 DPH3P1Q9H4G8 78 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 RNF7Q9UBF6 113 aa11.87□□□□□ -0.51
RTN3-205ENST00000356000 IGSF10Q6WRI0 2623 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 ITPR1Q14643 2758 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 TRAV8-3A0A0A6YYJ7 113 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 CCL3L1P16619 93 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 RHOHQ15669 191 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 SERP2Q8N6R1 65 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 M0R381 172 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 TIMM21Q9BVV7 248 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 TP53TG1Q9Y2A0 90 aa11.86□□□□□ -0.51
RTN3-205ENST00000356000 I3L3M4 83 aa11.85□□□□□ -0.51
RTN3-205ENST00000356000 SMAD5-AS1Q9Y6J3 95 aa11.85□□□□□ -0.51
RTN3-205ENST00000356000 PTPRQQ9UMZ3 2332 aa11.85□□□□□ -0.51
RTN3-205ENST00000356000 IGHV3-72A0A0B4J1Y9 119 aa11.85□□□□□ -0.51
RTN3-205ENST00000356000 Q6ZT83 130 aa11.84□□□□□ -0.51
RTN3-205ENST00000356000 TIMM17AQ99595 171 aa11.84□□□□□ -0.51
RTN3-205ENST00000356000 PRAC2D3DTV9 90 aa11.84□□□□□ -0.51
RTN3-205ENST00000356000 A0A0J9YXY3 114 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 SPRY3O43610 288 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 IGLV1-44P01699 117 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 COL6A6A6NMZ7 2263 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 NSUN5P1Q3KNT7 163 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 LINC00336Q6ZUF6 198 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 LITAFQ99732 161 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 ZFHX4Q86UP3 3567 aa11.83□□□□□ -0.52
RTN3-205ENST00000356000 C1orf43Q9BWL3 253 aa11.82□□□□□ -0.52
RTN3-205ENST00000356000 IGHV1-18A0A0C4DH31 117 aa11.82□□□□□ -0.52
RTN3-205ENST00000356000 LY6LH3BQJ8 138 aa11.82□□□□□ -0.52
RTN3-205ENST00000356000 PFN2P35080 140 aa11.82□□□□□ -0.52
RTN3-205ENST00000356000 PPP1R17O96001 155 aa11.81□□□□□ -0.52
RTN3-205ENST00000356000 GFRALQ6UXV0 394 aa11.81□□□□□ -0.52
RTN3-205ENST00000356000 DAND5Q8N907 189 aa11.81□□□□□ -0.52
RTN3-205ENST00000356000 DYNLRB1Q9NP97 96 aa11.81□□□□□ -0.52
RTN3-205ENST00000356000 GPHB5Q86YW7 130 aa11.81□□□□□ -0.52
RTN3-205ENST00000356000 CCL4P13236 92 aa11.8□□□□□ -0.52
RTN3-205ENST00000356000 TMEM200BQ69YZ2 307 aa11.8□□□□□ -0.52
RTN3-205ENST00000356000 C10orf105Q8TEF2 133 aa11.8□□□□□ -0.52
RTN3-205ENST00000356000 RPL35AP18077 110 aaKnown RBP11.79□□□□□ -0.52
RTN3-205ENST00000356000 SEC61GP60059 68 aa11.79□□□□□ -0.52
RTN3-205ENST00000356000 RPL39P62891 51 aaKnown RBP11.79□□□□□ -0.52
RTN3-205ENST00000356000 Q6ZSV7 163 aa11.79□□□□□ -0.52
RTN3-205ENST00000356000 ZFYVE26Q68DK2 2539 aa11.79□□□□□ -0.52
RTN3-205ENST00000356000 PRSS2P07478 247 aa11.77□□□□□ -0.52
RTN3-205ENST00000356000 TMEM86BQ8N661 226 aa11.77□□□□□ -0.52
RTN3-205ENST00000356000 S4R3C0 116 aa11.77□□□□□ -0.52
RTN3-205ENST00000356000 FREM2Q5SZK8 3169 aa11.77□□□□□ -0.53
RTN3-205ENST00000356000 NDUFC2-KCTD14E9PQ53 114 aa11.77□□□□□ -0.53
RTN3-205ENST00000356000 DAZ2Q13117 558 aaKnown RBP11.77□□□□□ -0.53
RTN3-205ENST00000356000 DAZ4Q86SG3 579 aaKnown RBP11.77□□□□□ -0.53
RTN3-205ENST00000356000 TMEM61Q8N0U2 210 aa11.77□□□□□ -0.53
RTN3-205ENST00000356000 DAZ1Q9NQZ3 744 aaKnown RBP11.77□□□□□ -0.53
RTN3-205ENST00000356000 DAZ3Q9NR90 486 aaKnown RBP11.77□□□□□ -0.53
RTN3-205ENST00000356000 SPRR3Q9UBC9 169 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 IGHV3-64A0A075B6Q5 118 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 TRGV5A0A0B4J1U4 118 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 EPM2AB3EWF7 344 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 MGPP08493 103 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 TIRAPP58753 221 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 ZFAND3Q9H8U3 227 aa11.76□□□□□ -0.53
RTN3-205ENST00000356000 ADAMTSL4-AS1Q5T5F5 129 aa11.75□□□□□ -0.53
RTN3-205ENST00000356000 C9orf85Q96MD7 179 aa11.75□□□□□ -0.53
RTN3-205ENST00000356000 IGHV3OR16-10A0A075B7F0 116 aa11.75□□□□□ -0.53
RTN3-205ENST00000356000 RS1O15537 224 aa11.75□□□□□ -0.53
RTN3-205ENST00000356000 DEFB127Q9H1M4 99 aa11.75□□□□□ -0.53
RTN3-205ENST00000356000 F8W735 103 aaPredicted RBP11.74□□□□□ -0.53
RTN3-205ENST00000356000 POLR2KP53803 58 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms