RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FABP4P15090 132 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 VWFP04275 2813 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 D6R8Y8 96 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 M0R381 172 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 SPRY2O43597 315 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 INSP01308 110 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 ORMDL3Q8N138 153 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 TMEM18Q96B42 140 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 MCRIP2Q9BUT9 160 aaKnown RBP11.32□□□□□ -0.6
LIMS1-202ENST00000338045 MDFICQ9P1T7 246 aa11.32□□□□□ -0.6
LIMS1-202ENST00000338045 TRGV11A0A075B6L2 103 aa11.31□□□□□ -0.6
LIMS1-202ENST00000338045 CCL25O15444 150 aa11.31□□□□□ -0.6
LIMS1-202ENST00000338045 WFDC10AQ9H1F0 79 aa11.31□□□□□ -0.6
LIMS1-202ENST00000338045 K7ERU9 68 aa11.3□□□□□ -0.6
LIMS1-202ENST00000338045 URB1-AS1Q96HZ7 61 aa11.3□□□□□ -0.6
LIMS1-202ENST00000338045 MUC4Q99102 2169 aa11.3□□□□□ -0.6
LIMS1-202ENST00000338045 WIPF1O43516 503 aa11.29□□□□□ -0.6
LIMS1-202ENST00000338045 PRELID3AQ96N28 172 aa11.29□□□□□ -0.6
LIMS1-202ENST00000338045 XCL2Q9UBD3 114 aa11.29□□□□□ -0.6
LIMS1-202ENST00000338045 FBN1P35555 2871 aaKnown RBP11.29□□□□□ -0.6
LIMS1-202ENST00000338045 CKS2P33552 79 aa11.29□□□□□ -0.6
LIMS1-202ENST00000338045 OCIAD2Q56VL3 154 aa11.29□□□□□ -0.6
LIMS1-202ENST00000338045 GIG44P09565 113 aaPredicted RBP11.28□□□□□ -0.6
LIMS1-202ENST00000338045 NIT1Q86X76 327 aa11.28□□□□□ -0.6
LIMS1-202ENST00000338045 AP1S3Q96PC3 154 aa11.28□□□□□ -0.6
LIMS1-202ENST00000338045 C1orf158Q8N1D5 194 aa11.27□□□□□ -0.6
LIMS1-202ENST00000338045 LINC01587Q99440 93 aa11.27□□□□□ -0.6
LIMS1-202ENST00000338045 DPH3P1Q9H4G8 78 aa11.27□□□□□ -0.6
LIMS1-202ENST00000338045 LAMTOR2Q9Y2Q5 125 aa11.27□□□□□ -0.6
LIMS1-202ENST00000338045 SMKR1H3BMG3 65 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 SHISA2Q6UWI4 295 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 GTSCR1Q86UQ5 136 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 CHCHD1Q96BP2 118 aaKnown RBP11.27□□□□□ -0.61
LIMS1-202ENST00000338045 KIF25-AS1Q9Y6Z4 181 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 MAST4O15021 2626 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 NOTCH3Q9UM47 2321 aa11.27□□□□□ -0.61
LIMS1-202ENST00000338045 NCR2O95944 276 aa11.26□□□□□ -0.61
LIMS1-202ENST00000338045 NPYP01303 97 aa11.26□□□□□ -0.61
LIMS1-202ENST00000338045 MORN3Q6PF18 240 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-202ENST00000338045 C14orf178Q8N769 122 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-202ENST00000338045 POM121L12Q8N7R1 296 aa11.26□□□□□ -0.61
LIMS1-202ENST00000338045 C3orf56Q8N813 242 aa11.26□□□□□ -0.61
LIMS1-202ENST00000338045 TMEM158Q8WZ71 300 aa11.26□□□□□ -0.61
LIMS1-202ENST00000338045 GAS8-AS1O95177 125 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 LINC00315P59091 139 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 DEFB125Q8N687 156 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 SYT8Q8NBV8 401 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 MRAP2Q96G30 205 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 SAMD10Q9BYL1 202 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 HSBP1O75506 76 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 IGLL1P15814 213 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 RNASEKQ6P5S7 137 aaKnown RBP11.25□□□□□ -0.61
LIMS1-202ENST00000338045 C11orf72Q8NBR9 251 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 PGPEP1Q9NXJ5 209 aa11.25□□□□□ -0.61
LIMS1-202ENST00000338045 TRRAPQ9Y4A5 3859 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 PRM2P04554 102 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 HTN1P15515 57 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 RPL35AP18077 110 aaKnown RBP11.24□□□□□ -0.61
LIMS1-202ENST00000338045 AMTP48728 403 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 ZNF415Q09FC8 603 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 PIK3CD-AS1Q5SR53 167 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 PTH2Q96A98 100 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 C1QTNF4Q9BXJ3 329 aa11.24□□□□□ -0.61
LIMS1-202ENST00000338045 TNFRSF6BO95407 300 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 GATA1P15976 413 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-202ENST00000338045 C12orf54Q6X4T0 127 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 NRACQ8N912 160 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 CSNK1G2-AS1Q8NCQ2 148 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 OR4C5Q8NGB2 326 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 JPT2Q9H910 190 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 PMCHP20382 165 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 ZNF876PQ49A33 203 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 FAM19A2Q8N3H0 131 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 MIEN1Q9BRT3 115 aa11.23□□□□□ -0.61
LIMS1-202ENST00000338045 TRAV26-2A0A0B4J265 109 aa11.22□□□□□ -0.61
LIMS1-202ENST00000338045 IFI27P40305 119 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-202ENST00000338045 PRSS3P2Q8NHM4 247 aa11.22□□□□□ -0.61
LIMS1-202ENST00000338045 CST9LQ9H4G1 147 aa11.22□□□□□ -0.61
LIMS1-202ENST00000338045 M0R2P5 195 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 SMIM17P0DL12 118 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 Q6ZWC4 215 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 MTURNQ8N3F0 131 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 MAP1LC3AQ9H492 121 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 AP5S1Q9NUS5 200 aa11.21□□□□□ -0.61
LIMS1-202ENST00000338045 LOC389332A0A1B0GUA5 103 aa11.21□□□□□ -0.62
LIMS1-202ENST00000338045 CRYGDP07320 174 aa11.21□□□□□ -0.62
LIMS1-202ENST00000338045 AZU1P20160 251 aa11.21□□□□□ -0.62
LIMS1-202ENST00000338045 FA2HQ7L5A8 372 aa11.21□□□□□ -0.62
LIMS1-202ENST00000338045 IL17DQ8TAD2 202 aa11.21□□□□□ -0.62
LIMS1-202ENST00000338045 IGHV1-24A0A0C4DH33 117 aa11.2□□□□□ -0.62
LIMS1-202ENST00000338045 LINC01546A6NGU7 62 aa11.2□□□□□ -0.62
LIMS1-202ENST00000338045 MGPP08493 103 aa11.2□□□□□ -0.62
LIMS1-202ENST00000338045 ZNF705AQ6ZN79 300 aaPredicted RBP11.2□□□□□ -0.62
LIMS1-202ENST00000338045 IGHV3OR16-12A0A075B7B8 117 aa11.19□□□□□ -0.62
LIMS1-202ENST00000338045 A0A087WWL8 130 aa11.19□□□□□ -0.62
LIMS1-202ENST00000338045 RASL10AQ92737 203 aa11.19□□□□□ -0.62
LIMS1-202ENST00000338045 NXT2Q9NPJ8 142 aaKnown RBP11.19□□□□□ -0.62
LIMS1-202ENST00000338045 IGLV2-18A0A075B6J9 118 aa11.19□□□□□ -0.62
LIMS1-202ENST00000338045 TMEM263Q8WUH6 116 aaKnown RBP11.19□□□□□ -0.62
LIMS1-202ENST00000338045 CRYBA4P53673 196 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms