RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 IGSF10Q6WRI0 2623 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 MUC4Q99102 2169 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 FAM208BQ5VWN6 2430 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 IGHV4-39P01824 125 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 CLPSL1A2RUU4 121 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 A4D1N5 150 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 ECSCRQ19T08 205 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 S100A4P26447 101 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 CLEC19AQ6UXS0 136 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 Q8N1Y9 231 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 NPBQ8NG41 125 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 ZFAND3Q9H8U3 227 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 TP53TG1Q9Y2A0 90 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 CELSR2Q9HCU4 2923 aa10.19□□□□□ -0.78
CCDC88C-201ENST00000331194 CENPVL3A0A0U1RRI6 287 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 GNRH2O43555 120 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 Q8NA96 180 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 ZNRF2Q8NHG8 242 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 OPRPNQ99935 248 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 TMEM262E9PQX1 116 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 JPT2Q9H910 190 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 LYRM7Q5U5X0 104 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 VCX2Q9H322 139 aa10.18□□□□□ -0.78
CCDC88C-201ENST00000331194 IGHV4-4A0A075B6R2 117 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 SLC25A29Q8N8R3 303 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 C20orf173Q96LM9 149 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 PHLDA3Q9Y5J5 127 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 TRAV2A0A0B4J234 112 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 POLQO75417 2590 aa10.17□□□□□ -0.78
CCDC88C-201ENST00000331194 RBAKDNA6NC62 111 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 GPHB5Q86YW7 130 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 CSDC2Q9Y534 153 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 ZNF580Q9UK33 172 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 IGHV7-81A0A0B4J1V7 117 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 G3V318 75 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 ODF3Q96PU9 254 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 AMELXQ99217 191 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 DPH3P1Q9H4G8 78 aa10.16□□□□□ -0.78
CCDC88C-201ENST00000331194 LRRK2Q5S007 2527 aa10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 IGKV3-7A0A075B6H7 116 aa10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 IGHV3-33P01772 117 aa10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 LY6DQ14210 128 aa10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 MRPL23Q16540 153 aaKnown RBP10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 Q1RN00 199 aa10.15□□□□□ -0.78
CCDC88C-201ENST00000331194 LOC107984640A0A0U1RRK4 108 aa10.15□□□□□ -0.79
CCDC88C-201ENST00000331194 F6UB75 175 aa10.15□□□□□ -0.79
CCDC88C-201ENST00000331194 C15orf53Q8NAA6 179 aa10.15□□□□□ -0.79
CCDC88C-201ENST00000331194 TIMD4Q96H15 378 aa10.15□□□□□ -0.79
CCDC88C-201ENST00000331194 C16orf92Q96LL3 132 aa10.15□□□□□ -0.79
CCDC88C-201ENST00000331194 FAM57AQ8TBR7 257 aa10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 USP9XQ93008 2570 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 ADARB2-AS1A8MUL3 147 aa10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 J3QQQ9 107 aa10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 IGF2-ASQ6U949 168 aa10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 MUSTN1Q8IVN3 82 aa10.14□□□□□ -0.79
CCDC88C-201ENST00000331194 IGIPA6NJ69 53 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 RNASE4P34096 147 aaKnown RBP10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 HERVK_113P61574 105 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 C9orf47Q6ZRZ4 202 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 CCDC140Q96MF4 163 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 CHCHD5Q9BSY4 110 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 A0A087WWL8 130 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 IGFL3Q6UXB1 125 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 GRNP28799 593 aaKnown RBP10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 PMVKQ15126 192 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 Q6ZSV7 163 aa10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 TMEM263Q8WUH6 116 aaKnown RBP10.13□□□□□ -0.79
CCDC88C-201ENST00000331194 SORL1Q92673 2214 aa10.12□□□□□ -0.79
CCDC88C-201ENST00000331194 C5orf47Q569G3 176 aa10.12□□□□□ -0.79
CCDC88C-201ENST00000331194 ZFAND2AQ8N6M9 145 aa10.12□□□□□ -0.79
CCDC88C-201ENST00000331194 LGALS3P17931 250 aaKnown RBP10.12□□□□□ -0.79
CCDC88C-201ENST00000331194 LINC00527Q9UJ94 153 aa10.12□□□□□ -0.79
CCDC88C-201ENST00000331194 K7ENP7 123 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 LINC00694P0DN24 101 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 SPXQ9BT56 116 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 LINC01620Q4KN68 170 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 ZNF462Q96JM2 2506 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 CUBNO60494 3623 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 TRAV8-4A0A0B4J246 113 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 ATP6V0E1O15342 81 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 ASIPP42127 132 aa10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 ZNF256Q9Y2P7 627 aaPredicted RBP10.11□□□□□ -0.79
CCDC88C-201ENST00000331194 F5H697 171 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 RNASE3P12724 160 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 CDSNQ15517 529 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 LINC01560Q8TB33 94 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 NPC2P61916 151 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 NRGNQ92686 78 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 DUX3Q96PT4 197 aa10.1□□□□□ -0.79
CCDC88C-201ENST00000331194 VMO1Q7Z5L0 202 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 Q8N9W7 124 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 METTL26Q96S19 204 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 UBTD1Q9HAC8 227 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 USP24Q9UPU5 2620 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 PRRC2AP48634 2157 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 TRIAP1O43715 76 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 LY6G5BQ8NDX9 201 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 LINC00315P59091 139 aa10.09□□□□□ -0.79
CCDC88C-201ENST00000331194 FAM74A4Q5TZK3 123 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms