RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 TMEM141Q96I45 108 aa18.45■□□□□ 0.54
SOX1-201ENST00000330949 LINC01560Q8TB33 94 aa18.44■□□□□ 0.54
SOX1-201ENST00000330949 TCF15Q12870 199 aa18.44■□□□□ 0.54
SOX1-201ENST00000330949 DPM3Q9P2X0 92 aa18.44■□□□□ 0.54
SOX1-201ENST00000330949 MAP1AP78559 2803 aaPredicted RBP18.43■□□□□ 0.54
SOX1-201ENST00000330949 EIF4EBP3O60516 100 aaPredicted RBP18.43■□□□□ 0.54
SOX1-201ENST00000330949 S100A4P26447 101 aaKnown RBP18.43■□□□□ 0.54
SOX1-201ENST00000330949 IGHV4-39P01824 125 aa18.43■□□□□ 0.54
SOX1-201ENST00000330949 PHLDA3Q9Y5J5 127 aa18.43■□□□□ 0.54
SOX1-201ENST00000330949 NDPQ00604 133 aa18.42■□□□□ 0.54
SOX1-201ENST00000330949 ZFHX3Q15911 3703 aa18.42■□□□□ 0.54
SOX1-201ENST00000330949 FOXC1Q12948 553 aa18.42■□□□□ 0.54
SOX1-201ENST00000330949 ZFAND3Q9H8U3 227 aa18.42■□□□□ 0.54
SOX1-201ENST00000330949 IGF2-ASQ6U949 168 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 Q8NA96 180 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 TIMM17AQ99595 171 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 TRBV30A0A0K0K1B3 111 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 ELANEP08246 267 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 LENEPQ9Y5L5 61 aa18.41■□□□□ 0.54
SOX1-201ENST00000330949 SPTAN1Q13813 2472 aaKnown RBP18.4■□□□□ 0.54
SOX1-201ENST00000330949 IGHV3-66A0A0C4DH42 116 aa18.4■□□□□ 0.54
SOX1-201ENST00000330949 FAM240AA0A1B0GVK7 77 aa18.4■□□□□ 0.54
SOX1-201ENST00000330949 GRNP28799 593 aaKnown RBP18.4■□□□□ 0.54
SOX1-201ENST00000330949 GPHB5Q86YW7 130 aa18.4■□□□□ 0.54
SOX1-201ENST00000330949 ZNRF2Q8NHG8 242 aa18.4■□□□□ 0.54
SOX1-201ENST00000330949 VPREB3Q9UKI3 123 aa18.4■□□□□ 0.54
SOX1-201ENST00000330949 ZNF876PQ49A33 203 aa18.39■□□□□ 0.53
SOX1-201ENST00000330949 C2orf82Q6UX34 121 aa18.39■□□□□ 0.53
SOX1-201ENST00000330949 MUSTN1Q8IVN3 82 aa18.39■□□□□ 0.53
SOX1-201ENST00000330949 PRR9Q5T870 116 aa18.38■□□□□ 0.53
SOX1-201ENST00000330949 YAE1D1Q9NRH1 226 aa18.38■□□□□ 0.53
SOX1-201ENST00000330949 HRNRQ86YZ3 2850 aaPredicted RBP18.38■□□□□ 0.53
SOX1-201ENST00000330949 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.38■□□□□ 0.53
SOX1-201ENST00000330949 SPTBN4Q9H254 2564 aa18.37■□□□□ 0.53
SOX1-201ENST00000330949 TRAV21A0A0B4J279 112 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 H3BT86 120 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 LEPROTO15243 131 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 MED14OSP0DP75 135 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 CHCHD5Q9BSY4 110 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 BEX4Q9NWD9 120 aaPredicted RBP18.36■□□□□ 0.53
SOX1-201ENST00000330949 SPRY2O43597 315 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 ZNF56Q15929 161 aa18.36■□□□□ 0.53
SOX1-201ENST00000330949 TRBV7-7A0A0K0K1E9 115 aa18.35■□□□□ 0.53
SOX1-201ENST00000330949 IGHV3OR16-13A0A075B7E8 117 aa18.35■□□□□ 0.53
SOX1-201ENST00000330949 IGHV3-74A0A0B4J1X5 117 aa18.35■□□□□ 0.53
SOX1-201ENST00000330949 TRIAP1O43715 76 aa18.35■□□□□ 0.53
SOX1-201ENST00000330949 CELSR1Q9NYQ6 3014 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 CLPSL1A2RUU4 121 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 M0R2P5 195 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 RPL39P62891 51 aaKnown RBP18.34■□□□□ 0.53
SOX1-201ENST00000330949 C15orf32Q32M92 178 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 POM121L12Q8N7R1 296 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 LINC01587Q99440 93 aa18.34■□□□□ 0.53
SOX1-201ENST00000330949 IGHV4OR15-8A0A075B7B6 117 aa18.33■□□□□ 0.52
SOX1-201ENST00000330949 A0A087WW49 117 aa18.33■□□□□ 0.52
SOX1-201ENST00000330949 J3KRW8 73 aa18.32■□□□□ 0.52
SOX1-201ENST00000330949 VCYO14598 125 aa18.32■□□□□ 0.52
SOX1-201ENST00000330949 METTL26Q96S19 204 aa18.32■□□□□ 0.52
SOX1-201ENST00000330949 H7C423 109 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 POLR2KP53803 58 aaKnown RBP18.31■□□□□ 0.52
SOX1-201ENST00000330949 PPDPFQ9H3Y8 114 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 VPS13CQ709C8 3753 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 TMEM223A0PJW6 202 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 CD3EP07766 207 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 TMEM101Q96IK0 257 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 C16orf92Q96LL3 132 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 LINC00477Q96M19 166 aa18.31■□□□□ 0.52
SOX1-201ENST00000330949 A0A0J9YX75 114 aa18.3■□□□□ 0.52
SOX1-201ENST00000330949 COX6CP09669 75 aa18.3■□□□□ 0.52
SOX1-201ENST00000330949 LY6DQ14210 128 aa18.3■□□□□ 0.52
SOX1-201ENST00000330949 SDHAF1A6NFY7 115 aa18.3■□□□□ 0.52
SOX1-201ENST00000330949 ZFAND2AQ8N6M9 145 aa18.3■□□□□ 0.52
SOX1-201ENST00000330949 IGF1P05019 195 aa18.29■□□□□ 0.52
SOX1-201ENST00000330949 DEFB121Q5J5C9 76 aa18.29■□□□□ 0.52
SOX1-201ENST00000330949 IGHV3-49A0A0A0MS15 119 aa18.28■□□□□ 0.52
SOX1-201ENST00000330949 C9orf139Q6ZV77 190 aa18.27■□□□□ 0.52
SOX1-201ENST00000330949 ICOSQ9Y6W8 199 aa18.27■□□□□ 0.52
SOX1-201ENST00000330949 LY6G5BQ8NDX9 201 aa18.27■□□□□ 0.52
SOX1-201ENST00000330949 SPANXDQ9BXN6 97 aa18.27■□□□□ 0.52
SOX1-201ENST00000330949 IMUPQ9GZP8 106 aa18.27■□□□□ 0.52
SOX1-201ENST00000330949 IGHV7-81A0A0B4J1V7 117 aa18.27■□□□□ 0.51
SOX1-201ENST00000330949 FAM110DQ8TAY7 271 aaPredicted RBP18.27■□□□□ 0.51
SOX1-201ENST00000330949 CHD8Q9HCK8 2581 aa18.26■□□□□ 0.51
SOX1-201ENST00000330949 NCOR2Q9Y618 2525 aa18.26■□□□□ 0.51
SOX1-201ENST00000330949 C3orf56Q8N813 242 aa18.26■□□□□ 0.51
SOX1-201ENST00000330949 IGHV1-69P01742 117 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 EBI3Q14213 229 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 DUX3Q96PT4 197 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 KIF25-AS1Q9Y6Z4 181 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 LINC00315P59091 139 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 CLEC19AQ6UXS0 136 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 Q8N6K4 173 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 NRGNQ92686 78 aa18.25■□□□□ 0.51
SOX1-201ENST00000330949 ODF3BA8MYP8 253 aa18.24■□□□□ 0.51
SOX1-201ENST00000330949 B9A039 149 aa18.24■□□□□ 0.51
SOX1-201ENST00000330949 NXPH4O95158 308 aa18.24■□□□□ 0.51
SOX1-201ENST00000330949 RNASE3P12724 160 aaKnown RBP18.24■□□□□ 0.51
SOX1-201ENST00000330949 DEFB104AQ8WTQ1 72 aa18.24■□□□□ 0.51
SOX1-201ENST00000330949 DNAJC30Q96LL9 226 aa18.24■□□□□ 0.51
SOX1-201ENST00000330949 ITLN2Q8WWU7 325 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms